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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171839 (77 seq.)
>WENV180359894
OBNS01059699
[OBNS] marine metagenome; Seawater
123
199
+
Pro
TGG
[ENA]
¡û
>WENV180376668
OBOM01049695
[OBOM] marine metagenome; Seawater
430
354
-
Pro
TGG
[ENA]
¡û
>WENV180397988
OBPZ01043097
[OBPZ] marine metagenome; ENVO:00002010
328
252
-
Pro
TGG
[ENA]
¡û
>W141055358
AONI01000010
Alphaproteobacteria
Litoreibacter arenae DSM 19593 [AONI]
123302
123226
-
Pro
TGG
[ENA]
¡û
>WENV181325656
OFLJ01011923
[OFLJ] seawater metagenome; seawater
256
332
+
Pro
TGG
[ENA]
¡û
>W141284770
JAMD01000001
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H3 [JAMD]
505628
505552
-
Pro
TGG
[ENA]
¡û
>WENV183619509
OOFQ01012011
[OOFQ] marine metagenome; seawater
256
332
+
Pro
TGG
[ENA]
¡û
>WENV170022289
BCQK01003987
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
766
690
-
Pro
TGG
[ENA]
¡û
>WENV170568155
FLMP01019722
[FLMP] seawater metagenome; seawater
891
815
-
Pro
TGG
[ENA]
¡û
>WENV170634325
FYBJ01000175
[FYBJ] marine metagenome; marine
16123
16199
+
Pro
TGG
[ENA]
¡û
>C181064504
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
1805554
1805478
-
Pro
TGG
-
¡û
>W141564891
JIBC01000006
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
453532
453608
+
Pro
TGG
[ENA]
¡û
>W141700134
JMIW01000002
Alphaproteobacteria
Erythrobacter longus [JMIW]
50329
50405
+
Pro
TGG
[ENA]
¡û
>W1911538696
OMOR01000001
Alphaproteobacteria
Ascidiaceihabitans donghaensis CECT 8599 [OMOR]
1902393
1902469
+
Pro
TGG
[ENA]
¡û
>W1810494759
QBFE01000021
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
395244
395168
-
Pro
TGG
[ENA]
¡û
>W1810494814
QBFF01000095
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
481029
480953
-
Pro
TGG
[ENA]
¡û
>W1810889039
QURJ01000001
Alphaproteobacteria
Altererythrobacter insulae BPTF-M16 [QURJ]
445304
445228
-
Pro
TGG
[ENA]
¡û
>W2011168926
OMOR01000001
Alphaproteobacteria
Ascidiaceihabitans donghaensis CECT 8599 [OMOR]
1902393
1902469
+
Pro
TGG
[ENA]
¡û
>W2011392237
RCCE01000004
Alphaproteobacteria
Litoreibacter meonggei DSM 29466 [RCCE]
327505
327581
+
Pro
TGG
[ENA]
¡û
>W2011617078
SKCJ01000001
Alphaproteobacteria
Altererythrobacter lutipelagi GH1-16 [SKCJ]
123754
123830
+
Pro
TGG
[ENA]
¡û
>W2011654704
SOBH01000001
Alphaproteobacteria
Litoreibacter halocynthiae DSM 29467 [SOBH]
1067779
1067855
+
Pro
TGG
[ENA]
¡û
>W2012031258
VHJK01000001
Alphaproteobacteria
Erythrobacter sp. JBTF-M21 [VHJK]
103329
103405
+
Pro
TGG
[ENA]
¡û
>W2012438758
WTYE01000001
Alphaproteobacteria
Erythrobacter jejuensis JCM 16677 [WTYE]
1784344
1784268
-
Pro
TGG
[ENA]
¡û
>ENV09003984
ADIF01007372
Marine metagenome apSum_C1
163
87
-
Pro
TGG
[ENA]
¡û
>W2110284332
JACXLC010000001
Alphaproteobacteria
Erythrobacter sp. KMU-140 [JACXLC]
1666466
1666542
+
Pro
TGG
[ENA]
¡û
>W2110570411
JAGSPB010000001
Alphaproteobacteria
Erythrobacter sp. WH131 [JAGSPB]
59421
59497
+
Pro
TGG
[ENA]
¡û
>W2110570475
JAGSPC010000001
Alphaproteobacteria
Erythrobacter sp. WH158 [JAGSPC]
1736047
1735971
-
Pro
TGG
[ENA]
¡û
>C211173235
CP063202
Alphaproteobacteria
Erythrobacter sp. SCSIO 43205 [CP063202]
1692448
1692372
-
Pro
TGG
-
¡û
>C231204170
CP085154
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 [CP085154]
2298294
2298218
-
Pro
TGG
-
¡û
>C231232695
CP086764
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-74 [CP086764]
2778415
2778491
+
Pro
TGG
-
¡û
>C231232760
CP086775
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-69 [CP086775]
1944085
1944009
-
Pro
TGG
-
¡û
>C231232795
CP086783
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-68 [CP086783]
3135951
3135875
-
Pro
TGG
-
¡û
>C231232838
CP086790
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-67 [CP086790]
3138606
3138530
-
Pro
TGG
-
¡û
>C231232883
CP086798
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-47 [CP086798]
2640102
2640026
-
Pro
TGG
-
¡û
>C231232926
CP086808
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-54 [CP086808]
2670505
2670429
-
Pro
TGG
-
¡û
>C231232952
CP086816
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-52 [CP086816]
1976426
1976502
+
Pro
TGG
-
¡û
>C231233010
CP086824
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-5 [CP086824]
3141352
3141276
-
Pro
TGG
-
¡û
>C231233030
CP086832
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-33 [CP086832]
722903
722979
+
Pro
TGG
-
¡û
>C231233105
CP086839
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TC12-31 [CP086839]
993392
993316
-
Pro
TGG
-
¡û
>C231233139
CP086847
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC33-87 [CP086847]
3125334
3125258
-
Pro
TGG
-
¡û
>C231233161
CP086854
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC33-25 [CP086854]
1068715
1068791
+
Pro
TGG
-
¡û
>C231233211
CP086862
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC33-17 [CP086862]
2808719
2808795
+
Pro
TGG
-
¡û
>C231233247
CP086870
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-97 [CP086870]
1213333
1213409
+
Pro
TGG
-
¡û
>C231233316
CP086877
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-89 [CP086877]
2631163
2631087
-
Pro
TGG
-
¡û
>C231233336
CP086886
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-67 [CP086886]
1219528
1219604
+
Pro
TGG
-
¡û
>C231233379
CP086894
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-37 [CP086894]
1219516
1219592
+
Pro
TGG
-
¡û
>C231233449
CP086901
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-35 [CP086901]
993398
993322
-
Pro
TGG
-
¡û
>C231233469
CP086909
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-34 [CP086909]
2243794
2243870
+
Pro
TGG
-
¡û
>C231233528
CP086919
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-32 [CP086919]
2637353
2637277
-
Pro
TGG
-
¡û
>C231233577
CP086930
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-30 [CP086930]
1954528
1954452
-
Pro
TGG
-
¡û
>C231233596
CP086938
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-29 [CP086938]
1342305
1342381
+
Pro
TGG
-
¡û
>C231233638
CP086947
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-28 [CP086947]
1800677
1800753
+
Pro
TGG
-
¡û
>C231233680
CP086954
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-27 [CP086954]
1219524
1219600
+
Pro
TGG
-
¡û
>C231233750
CP086963
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-15 [CP086963]
993397
993321
-
Pro
TGG
-
¡û
>C231233784
CP086971
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-114 [CP086971]
3138604
3138528
-
Pro
TGG
-
¡û
>C231233809
CP086979
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-111 [CP086979]
1219520
1219596
+
Pro
TGG
-
¡û
>C231233855
CP086986
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-110 [CP086986]
1901307
1901383
+
Pro
TGG
-
¡û
>C231233915
CP086995
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-109 [CP086995]
2636620
2636544
-
Pro
TGG
-
¡û
>C231233938
CP087002
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-105 [CP087002]
1219522
1219598
+
Pro
TGG
-
¡û
>C231233999
CP087009
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-71 [CP087009]
3138606
3138530
-
Pro
TGG
-
¡û
>C231234050
CP087016
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-70 [CP087016]
1946131
1946055
-
Pro
TGG
-
¡û
>C231234062
CP087025
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-68 [CP087025]
722904
722980
+
Pro
TGG
-
¡û
>C231234130
CP087032
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-67 [CP087032]
2630927
2630851
-
Pro
TGG
-
¡û
>C231234160
CP087042
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-18 [CP087042]
3703042
3703118
+
Pro
TGG
-
¡û
>C231234216
CP087051
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-43 [CP087051]
2636896
2636820
-
Pro
TGG
-
¡û
>C231234259
CP087059
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-24 [CP087059]
2637352
2637276
-
Pro
TGG
-
¡û
>C231234277
CP087066
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-22 [CP087066]
722903
722979
+
Pro
TGG
-
¡û
>C231234351
CP087073
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-14 [CP087073]
1950055
1949979
-
Pro
TGG
-
¡û
>C231234373
CP087083
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-1 [CP087083]
3163807
3163883
+
Pro
TGG
-
¡û
>C231234429
CP087090
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-26 [CP087090]
3138586
3138510
-
Pro
TGG
-
¡û
>C241167711
CP054599
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H46 [CP054599]
2362044
2361968
-
Pro
TGG
-
¡û
>W1610092058
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
961561
961485
-
Pro
TGG
[ENA]
¡û
>W1710095415
CXSU01000012
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
961561
961485
-
Pro
TGG
[ENA]
¡û
>W1710529848
FNOI01000001
Alphaproteobacteria
Litoreibacter albidus [FNOI]
902562
902486
-
Pro
TGG
[ENA]
¡û
>W1710574843
FOYO01000001
Alphaproteobacteria
Litoreibacter janthinus [FOYO]
2454168
2454244
+
Pro
TGG
[ENA]
¡û
>W1710583490
FQUV01000002
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
504410
504486
+
Pro
TGG
[ENA]
¡û
>W1710584506
FQVP01000001
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
414158
414234
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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