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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171856 (31 seq.)
>W131202468
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
675602
675529
-
Met
CAT
[ENA]
¡û
>W131010420
AHYM01000002
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
446247
446320
+
Met
CAT
[ENA]
¡û
>W131202450
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
458883
458956
+
Met
CAT
[ENA]
¡û
>WENV170560357
CYGL01000764
[CYGL] human gut metagenome;
9554
9481
-
Met
CAT
[ENA]
¡û
>WENV170560517
CYGL01004186
[CYGL] human gut metagenome;
792
719
-
Met
CAT
[ENA]
¡û
>PHG181002383
KU892558
Siphoviridae
Lactococcus phage PLgT-1 (KU892558)
660
587
-
Met
CAT
[ENA]
¡û
>C191044518
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
909905
909978
+
Met
CAT
-
¡û
>C191044560
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1123249
1123176
-
Met
CAT
-
¡û
>W2010145308
BLXU01000001
Bacillota
Lactococcus garvieae lg38 [BLXU]
306058
305985
-
Ile2
CAT
[ENA]
¡û
>W2011544130
SDHJ01000025
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
1935
1862
-
Ile2
CAT
[ENA]
¡û
>W2011544259
SDHM01000003
Bacillota
Lactococcus petauri GRT2 [SDHM]
180767
180694
-
Ile2
CAT
[ENA]
¡û
>W2011544448
SDHQ01000007
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
100943
100870
-
Ile2
CAT
[ENA]
¡û
>W2110437333
JAEOAS010000013
Bacillota
Lactococcus petauri H10 [JAEOAS]
1914
1989
+
Ile2
CAT
[ENA]
¡û
>W2110583780
JAGYXD010000003
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
29540
29613
+
Ile2
CAT
[ENA]
¡û
>C211221962
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
750697
750770
+
Ile2
CAT
-
¡û
>C211222311
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
1963060
1963135
+
Ile2
CAT
-
¡û
>C211289085
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
885868
885941
+
Ile2
CAT
-
¡û
>C211289125
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
1097530
1097457
-
Ile2
CAT
-
¡û
>C211289142
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
1040839
1040912
+
Ile2
CAT
-
¡û
>C211289308
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
370140
370215
+
Ile2
CAT
-
¡û
>C231227675
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
783656
783729
+
Ile2
CAT
-
¡û
>C231353067
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
758827
758902
+
Ile2
CAT
-
¡û
>C231519441
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
870290
870365
+
Ile2
CAT
-
¡û
>C241103668
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
1032592
1032665
+
Ile2
CAT
-
¡û
>C11112688
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
890461
890534
+
Met
CAT
[Ensembl]
¡û
>C11112730
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1107180
1107107
-
Met
CAT
[Ensembl]
¡û
>C11112748
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
908895
908968
+
Met
CAT
[Ensembl]
¡û
>C11112790
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1121239
1121166
-
Met
CAT
[Ensembl]
¡û
>W1511314693
JPUJ01000027
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
9500
9573
+
Met
CAT
[ENA]
¡û
>W1610635168
LITB01000003
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
31542
31469
-
Met
CAT
[ENA]
¡û
>W1710769741
LITB01000003
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
31542
31469
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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