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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171935 (10 seq.)
>W09133505
ACPD01000138
Bacillota
Clostridium cellulovorans 743B [ACPD]
162
238
+
Arg
TCG
[ENA]
¡û
>W2010513049
JAAMNG010000014
Bacillota
Clostridium estertheticum FP4 [JAAMNG]
53209
53285
+
Arg
TCG
[ENA]
¡û
>W2110616559
JAHLEB010000005
Bacillota
Clostridium lacusfryxellense DSM 14205 [JAHLEB]
137204
137128
-
Arg
TCG
[ENA]
¡û
>W2110616773
JAHLEE010000002
Bacillota
Clostridium sp. CF011 [JAHLEE]
117234
117310
+
Arg
TCG
[ENA]
¡û
>W2110669185
JAICEC010000002
Bacillota
Clostridium sp. CM027 [JAICEC]
169164
169088
-
Arg
TCG
[ENA]
¡û
>W2110669266
JAICED010000002
Bacillota
Clostridium sp. CM028 [JAICED]
125521
125597
+
Arg
TCG
[ENA]
¡û
>C231155807
CP077725
Bacillota
Clostridium sp. CM027 [CP077725]
3455296
3455372
+
Arg
TCG
-
¡û
>C241182053
CP077766
Bacillota
Clostridium sp. CM028 [CP077766]
3132513
3132589
+
Arg
TCG
-
¡û
>C10102780
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
1697507
1697583
+
Arg
TCG
[Ensembl]
¡û
>W11184320
BABR01000323
Bacillota
Clostridium cellulovorans 743B [BABR]
856
780
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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