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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172048 (63 seq.)
>W1710821470
LKTL01000007
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
35053
35129
+
Pro
GGG
[ENA]
¡û
>W1711273409
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
1013129
1013205
+
Pro
GGG
[ENA]
¡û
>W1711624479
MPHJ01000015
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
86651
86727
+
Pro
GGG
[ENA]
¡û
>W1711624549
MPHK01000002
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
55118
55194
+
Pro
GGG
[ENA]
¡û
>C171033426
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
465067
464991
-
Pro
GGG
-
¡û
>C171108641
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1959017
1958941
-
Pro
GGG
-
¡û
>C020958
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
2768128
2768204
+
Pro
GGG
[Ensembl]
¡û
>w028552
ABDD01000026
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
28397
28319
-
Pro
GGG
[ENA]
¡û
>w021070
AAVJ01000007
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
49234
49312
+
Pro
GGG
[ENA]
¡û
>w020013
AAUO01000042
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
902
980
+
Pro
GGG
[ENA]
¡û
>w007662
AAIU01000009
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
45990
46068
+
Pro
GGG
[ENA]
¡û
>W08005688
ABIC01000032
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
40255
40331
+
Pro
GGG
[ENA]
¡û
>C08010628
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
2179378
2179305
-
Pro
GGG
[Ensembl]
¡û
>C08010234
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
2143350
2143277
-
Pro
GGG
[Ensembl]
¡û
>WENV182556883
OJDH01000709
[OJDH] seawater metagenome; Sea water
3873
3949
+
Pro
GGG
[ENA]
¡û
>WENV182594453
OJIV01014026
[OJIV] seawater metagenome; Sea water
330
254
-
Pro
GGG
[ENA]
¡û
>C08009860
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
3032737
3032813
+
Pro
GGG
[Ensembl]
¡û
>C08010756
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
3404309
3404385
+
Pro
GGG
[Ensembl]
¡û
>WENV170024672
BCQL01095952
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
556
632
+
Pro
GGG
[ENA]
¡û
>C181214243
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
2155142
2155066
-
Pro
GGG
-
¡û
>W1910676731
MCTV01000018
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
13958
13882
-
Pro
GGG
[ENA]
¡û
>W1910676943
MCTY01000173
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
37275
37351
+
Pro
GGG
[ENA]
¡û
>W1910677481
MCUF01000038
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
40061
39985
-
Pro
GGG
[ENA]
¡û
>W1910679521
MCVG01000134
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14336
14260
-
Pro
GGG
[ENA]
¡û
>W1910679664
MCVI01000020
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
14559
14483
-
Pro
GGG
[ENA]
¡û
>C09109857
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
2363681
2363605
-
Pro
GGG
[Ensembl]
¡û
>W1911710094
QPQU01000004
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
275812
275888
+
Pro
GGG
[ENA]
¡û
>W2010612063
JABRVS010000001
Gammaproteobacteria
Shewanella sp. VB17 [JABRVS]
3242244
3242320
+
Pro
GGG
[ENA]
¡û
>W2010734511
JACJDV010000012
Gammaproteobacteria
Shewanella sp. SR44-3 [JACJDV]
36246
36170
-
Pro
GGG
[ENA]
¡û
>W2010810461
MCTV01000018
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
13958
13882
-
Pro
GGG
[ENA]
¡û
>W2010810674
MCTY01000173
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
37275
37351
+
Pro
GGG
[ENA]
¡û
>W2010811214
MCUF01000038
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
40061
39985
-
Pro
GGG
[ENA]
¡û
>W2010813256
MCVG01000134
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14336
14260
-
Pro
GGG
[ENA]
¡û
>W2010813399
MCVI01000020
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
14559
14483
-
Pro
GGG
[ENA]
¡û
>W2011284572
QPQU01000004
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
275812
275888
+
Pro
GGG
[ENA]
¡û
>W2011498199
RXNU01000024
Gammaproteobacteria
Shewanella canadensis HAW-EB2 [RXNU]
31145
31069
-
Pro
GGG
[ENA]
¡û
>W2011498310
RXNV01000022
Gammaproteobacteria
Shewanella atlantica HAW-EB5 [RXNV]
10667
10743
+
Pro
GGG
[ENA]
¡û
>W2012063159
VJOS01000015
Gammaproteobacteria
Shewanella sp. YLB-08 [VJOS]
72827
72903
+
Pro
GGG
[ENA]
¡û
>W2012070321
VKGK01000045
Gammaproteobacteria
Shewanella hanedai JCM 20706 [VKGK]
23703
23627
-
Pro
GGG
[ENA]
¡û
>W2012070507
VKHR01000013
Gammaproteobacteria
Shewanella sp. TC10 [VKHR]
55083
55007
-
Pro
GGG
[ENA]
¡û
>W2012106525
VOQB01000021
Gammaproteobacteria
Shewanella sp. YLB-07 [VOQB]
81935
82011
+
Pro
GGG
[ENA]
¡û
>W2110035290
BMPL01000048
Gammaproteobacteria
Shewanella hanedai JCM 20706 [BMPL]
24176
24100
-
Pro
GGG
[ENA]
¡û
>W2110068953
BPET01000006
Gammaproteobacteria
Shewanella sp. MBTL60-007 [BPET]
32524
32448
-
Pro
GGG
[ENA]
¡û
>W2110069196
BPEV01000033
Gammaproteobacteria
Shewanella sp. KT0246 [BPEV]
44326
44250
-
Pro
GGG
[ENA]
¡û
>W2110069300
BPEW01000044
Gammaproteobacteria
Shewanella sp. c952 [BPEW]
11730
11806
+
Pro
GGG
[ENA]
¡û
>W2110069336
BPEX01000010
Gammaproteobacteria
Shewanella schlegeliana JCM 11561 [BPEX]
92464
92540
+
Pro
GGG
[ENA]
¡û
>W2110069500
BPEY01000070
Gammaproteobacteria
Shewanella sairae JCM 11563 [BPEY]
5884
5960
+
Pro
GGG
[ENA]
¡û
>W2110069552
BPEZ01000003
Gammaproteobacteria
Shewanella sp. MBTL60-112-B1 [BPEZ]
217132
217208
+
Pro
GGG
[ENA]
¡û
>W2110069695
BPFA01000008
Gammaproteobacteria
Shewanella sp. MBTL60-112-B2 [BPFA]
169213
169289
+
Pro
GGG
[ENA]
¡û
>W2110556797
JAGJDZ010000001
Gammaproteobacteria
Shewanella sp. MMG014 [JAGJDZ]
35923
35999
+
Pro
GGG
[ENA]
¡û
>W2110667410
JAHZST010000018
Gammaproteobacteria
Shewanella sp. NR704-98 [JAHZST]
28018
27942
-
Pro
GGG
[ENA]
¡û
>C201098532
CP041614
Gammaproteobacteria
Shewanella sp. YLB-06 [CP041614]
2584768
2584692
-
Pro
GGG
-
¡û
>C211063193
CP045427
Gammaproteobacteria
Shewanella sp. YLB-09 [CP045427]
3769976
3770052
+
Pro
GGG
-
¡û
>C211063984
CP045503
Gammaproteobacteria
Shewanella sp. YLB-08 [CP045503]
3396189
3396265
+
Pro
GGG
-
¡û
>C211156668
CP062058
Gammaproteobacteria
Shewanella sp. WPAGA9 [CP062058]
1355977
1355901
-
Pro
GGG
-
¡û
>C231209800
CP085636
Gammaproteobacteria
Shewanella sp. MTB7 [CP085636]
3576390
3576466
+
Pro
GGG
-
¡û
>C241061778
CP041783
Gammaproteobacteria
Shewanella donghaensis LT17 [CP041783]
132555
132479
-
Pro
GGG
-
¡û
>C241274106
CP126972
Gammaproteobacteria
Shewanella goraebulensis DAU312 [CP126972]
2913889
2913965
+
Pro
GGG
-
¡û
>C10112908
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
2011760
2011684
-
Pro
GGG
[Ensembl]
¡û
>W1610460577
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
145131
145055
-
Pro
GGG
[ENA]
¡û
>W1610685432
LKTL01000007
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
35053
35129
+
Pro
GGG
[ENA]
¡û
>W1611032758
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
1013129
1013205
+
Pro
GGG
[ENA]
¡û
>W1710460141
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
145131
145055
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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