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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172372 (51 seq.)
>W131237528
AUOS01000406
Bacteroidota
Cytophagaceae bacterium JGI 0001001-B3 [AUOS]
9654
9580
-
Ala
TGC
[ENA]
¡û
>C016350
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
121670
121746
+
Ala
TGC
[Ensembl]
¡û
>WENV180004372
FLRS01000891
[FLRS] metagenome; saliva
408
482
+
Ala
TGC
[ENA]
¢þ
>WENV180006814
FLRZ01000875
[FLRZ] metagenome; saliva
273
347
+
Ala
TGC
[ENA]
¢þ
>WENV180006957
FLRZ01040027
[FLRZ] metagenome; saliva
757
683
-
Ala
TGC
[ENA]
¢þ
>WENV180096773
MTBK01147085
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
399
326
-
Ala
TGC
[ENA]
¢þ
>WENV180229676
OBCI01012867
[OBCI] human gut metagenome; human gut
147
221
+
Ala
TGC
[ENA]
¢þ
>WENV180230416
OBCL01011485
[OBCL] human gut metagenome; human gut
395
469
+
Ala
TGC
[ENA]
¢þ
>WENV180402643
OBRQ01000963
[OBRQ] human gut metagenome; ENVO:feces
92
166
+
Ala
TGC
[ENA]
¢þ
>WENV180548438
OCIW01032784
[OCIW] human oral metagenome; human oral
160
86
-
Ala
TGC
[ENA]
¢þ
>WENV180679450
OCVV012266970
[OCVV] gut metagenome; gut
151
225
+
Ala
TGC
[ENA]
¢þ
>WENV180679452
OCVV012266970
[OCVV] gut metagenome; gut
151
225
+
Ala
TGC
[ENA]
¢þ
>WENV180728363
ODGU01043372
[ODGU] human metagenome; G_DNA_Supragingival plaque
518
592
+
Ala
TGC
[ENA]
¢þ
>WENV180796720
ODJB01010848
[ODJB] human metagenome; G_DNA_Supragingival plaque
518
592
+
Ala
TGC
[ENA]
¢þ
>WENV180796787
ODJB01013729
[ODJB] human metagenome; G_DNA_Supragingival plaque
303
377
+
Ala
TGC
[ENA]
¢þ
>WENV180855224
ODKX01048331
[ODKX] human metagenome; G_DNA_Tongue dorsum
31
105
+
Ala
TGC
[ENA]
¢þ
>WENV180949359
ODUG01014646
[ODUG] human metagenome; G_DNA_Tongue dorsum
1487
1561
+
Ala
TGC
[ENA]
¢þ
>WENV180949937
ODUG01056652
[ODUG] human metagenome; G_DNA_Tongue dorsum
365
439
+
Ala
TGC
[ENA]
¢þ
>WENV180950974
ODUH01005218
[ODUH] human metagenome; G_DNA_Subgingival plaque
1489
1566
+
Ala
TGC
[ENA]
¢þ
>WENV181039992
ODXQ01098299
[ODXQ] human metagenome; G_DNA_Tongue dorsum
307
233
-
Ala
TGC
[ENA]
¢þ
>WENV181046235
ODXW01013006
[ODXW] human metagenome; G_DNA_Tongue dorsum
1366
1292
-
Ala
TGC
[ENA]
¢þ
>WENV181091459
OEBC01035821
[OEBC] human metagenome; G_DNA_Supragingival plaque
399
474
+
Ala
TGC
[ENA]
¢þ
>WENV181179932
OEJT01031743
[OEJT] human metagenome; G_DNA_Supragingival plaque
93
167
+
Ala
TGC
[ENA]
¢þ
>WENV181222737
OFDC01000151
[OFDC] hot springs metagenome; Water
67407
67481
+
Ala
TGC
[ENA]
¢þ
>WENV181227590
OFDN01019910
[OFDN] hot springs metagenome; Water
1961
1887
-
Ala
TGC
[ENA]
¢þ
>WENV181502297
OGGI01014594
[OGGI] metagenome; Human gut stool
94
168
+
Ala
TGC
[ENA]
¢þ
>WENV181579137
OGJY01020857
[OGJY] metagenome; Human gut stool
348
422
+
Ala
TGC
[ENA]
¢þ
>WENV182134542
OHKH01023346
[OHKH] human gut metagenome; feces
40
114
+
Ala
TGC
[ENA]
¢þ
>WENV182731837
OJQA01007692
[OJQA] human gut metagenome; stool sample
262
336
+
Ala
TGC
[ENA]
¢þ
>WENV183146710
OLOM01016980
[OLOM] human gut metagenome; faeces
2159
2085
-
Ala
TGC
[ENA]
¢þ
>WENV183179929
OLPH01029989
[OLPH] human gut metagenome; faeces
1125
1051
-
Ala
TGC
[ENA]
¢þ
>WENV183207399
OLQA01014230
[OLQA] human gut metagenome; faeces
2873
2799
-
Ala
TGC
[ENA]
¢þ
>WENV183379297
OLYC01015629
[OLYC] human gut metagenome; feces
353
429
+
Ala
TGC
[ENA]
¢þ
>WENV183420534
OMBA01007642
[OMBA] human gut metagenome; feces
2157
2083
-
Ala
TGC
[ENA]
¢þ
>WENV183447040
OMCS01000862
[OMCS] human gut metagenome; feces
348
422
+
Ala
TGC
[ENA]
¢þ
>WENV183656166
OQWE01007908
[OQWE] human gut metagenome; human gut
2201
2127
-
Ala
TGC
[ENA]
¢þ
>WENV170008179
AMZC01003738
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1555
1482
-
Ala
TGC
[ENA]
¢þ
>WENV170561970
CZCB01000472
[CZCB] anaerobic digester metagenome; anaerobic digester
3326
3253
-
Ala
TGC
[ENA]
¢þ
>WENV170678540
LDZU01001697
[LDZU] terrestrial metagenome; oil reservoir sample SB2
465
538
+
Ala
TGC
[ENA]
¢þ
>WENV170719575
LSQX01118891
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1049
1122
+
Ala
TGC
[ENA]
¢þ
>C181102434
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
2188970
2189044
+
Ala
TGC
-
¡û
>C181102448
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
791029
790955
-
Ala
TGC
-
¡û
>C181102450
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
485615
485541
-
Ala
TGC
-
¡û
>W09128341
ACLR01000152
Bacteroidota
Porphyromonas uenonis Mar-60 [ACLR]
2525
2599
+
Ala
TGC
[ENA]
¡û
>W1910371042
FUFB01000071
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
3295
3221
-
Ala
TGC
[ENA]
¡û
>W1910371300
FUFH01000075
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
2698
2772
+
Ala
TGC
[ENA]
¡û
>W1910371351
FUFJ01000022
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
3127
3053
-
Ala
TGC
[ENA]
¡û
>W1911247439
NSLM01000048
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
3312
3238
-
Ala
TGC
[ENA]
¡û
>W1911709147
QPGS01000066
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
3296
3222
-
Ala
TGC
[ENA]
¡û
>C161046920
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
231425
231501
+
Ala
TGC
-
¡û
>W1710018000
ASYP01000012
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
1822
1898
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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