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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172532 (11 seq.)
>W1710977090
LPLZ01000079
Betaproteobacteria
Burkholderia territorii [LPLZ]
8045
7969
-
Pro
TGG
[ENA]
¡û
>W141073644
ASSI01000060
Betaproteobacteria
Burkholderia sp. AU4i [ASSI]
92486
92410
-
Pro
TGG
[ENA]
¡û
>W2010145940
CAAAFK010000009
Betaproteobacteria
Burkholderia vietnamiensis JW13 [CAAAFK]
412316
412392
+
Pro
TGG
[ENA]
¡û
>W2010304878
CABVQC010000105
Betaproteobacteria
Burkholderia lata [CABVQC]
3711
3635
-
Pro
TGG
[ENA]
¡û
>W2010305690
CABVQR010000048
Betaproteobacteria
Burkholderia contaminans [CABVQR]
8543
8619
+
Pro
TGG
[ENA]
¡û
>W2110118452
CAJNKO010000024
Betaproteobacteria
Burkholderia sp. LMG 13014 [CAJNKO]
4734
4658
-
Pro
TGG
[ENA]
¡û
>W2110118560
CAJNKR010000002
Betaproteobacteria
Burkholderia sp. LMG 13014 [CAJNKR]
30075
29999
-
Pro
TGG
[ENA]
¡û
>W2110572969
JAGSWN010000010
Betaproteobacteria
Burkholderia vietnamiensis AU42237 [JAGSWN]
115110
115186
+
Pro
TGG
[ENA]
¡û
>W1510019236
BBWE01000021
Alphaproteobacteria
Aquamicrobium sp. SK-2 [BBWE]
5037
4961
-
Pro
TGG
[ENA]
¡û
>W2130034127
JAGSVU010000030
Betaproteobacteria
Burkholderia vietnamiensis AU38631 [JAGSVU]
69364
69288
-
Pro
TGG
[ENA]
¡û
>W1610833304
LPLZ01000079
Betaproteobacteria
Burkholderia territorii [LPLZ]
8045
7969
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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