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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.172836 (18 seq.)
>W1711220326
LXQI01000015
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
88127
88203
+
Arg
CCG
[ENA]
¡û
>W1711727510
MTSX01000003
Alphaproteobacteria
Kiloniella majae M146.1 [MTSX]
473361
473285
-
Arg
CCG
[ENA]
¡û
>W1711727587
MTSZ01000008
Alphaproteobacteria
Kiloniella majae M56.1 [MTSZ]
42400
42476
+
Arg
CCG
[ENA]
¡û
>W131182206
ARQE01000005
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
82753
82829
+
Arg
CCG
[ENA]
¡û
>W141279566
JAGK01000001
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
235159
235235
+
Arg
CCG
[ENA]
¡û
>WENV183747883
PPFU01001874
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3953
3877
-
Arg
CCG
[ENA]
¡û
>WENV170574466
FLYM01041927
[FLYM] hot springs metagenome; Sediment
361
437
+
Arg
CCG
[ENA]
¡û
>SRA1016492
SRR023846.529439
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
89
165
+
Arg
CCG
[SRA]
>W2011375686
RBLI01000002
Alphaproteobacteria
Paracoccus pantotrophus DSM 2944 [RBLI]
1241404
1241328
-
Arg
CCG
[ENA]
¡û
>W2011642316
SMZP01000003
Alphaproteobacteria
Caulobacter sp. RHG1 [SMZP]
194106
194182
+
Arg
CCG
[ENA]
¡û
>C231406643
CP098774
Alphaproteobacteria
Sphingomonas sp. QA11 [CP098774]
53854
53778
-
Arg
CCG
-
¡û
>C231452780
CP102384
Alphaproteobacteria
Sphingopyxis sp. DBS4 [CP102384]
3812505
3812581
+
Arg
CCG
-
¡û
>C231554981
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
3871444
3871520
+
Arg
CCG
-
¡û
>C241131788
CP048817
Alphaproteobacteria
Sphingomonas sp. So64.6b [CP048817]
44911
44835
-
Arg
CCG
-
¡û
>C241174493
CP058689
Alphaproteobacteria
Paracoccus pantotrophus ACCC10489 [CP058689, CP058690]
770356
770432
+
Arg
CCG
-
¡û
>C161047286
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1388460
1388384
-
Arg
CCG
-
¡û
>W1611004798
LXQI01000015
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
88127
88203
+
Arg
CCG
[ENA]
¡û
>W1710516796
FNCV01000002
Alphaproteobacteria
Roseospirillum parvum [FNCV]
187781
187705
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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