This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173083 (44 seq.)
>W1710864856
LMGF01000002
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
168123
168047
-
Arg
CCT
[ENA]
¡û
>W1710912990
LNSB01000055
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
17444
17520
+
Arg
CCT
[ENA]
¡û
>W1711259765
LYVN01000013
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
28793
28717
-
Arg
CCT
[ENA]
¡û
>W131224703
AUDA01000052
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
29599
29675
+
Arg
CCT
[ENA]
¡û
>W1711503911
MKUB01000041
Alphaproteobacteria
Sphingomonadales bacterium 63-6 [MKUB]
23241
23165
-
Arg
CCT
[ENA]
¡û
>W1712105844
NISK01000009
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
1331
1255
-
Arg
CCT
[ENA]
¡û
>C171019683
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
317499
317575
+
Arg
CCT
-
¡û
>C171094576
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
2260119
2260043
-
Arg
CCT
-
¡û
>WENV180039768
LLBY010156267
[LLBY] soil metagenome; soil from tomato rhizosphere
4472
4396
-
Arg
CCT
[ENA]
¡û
>WENV180041109
LLBZ010045213
[LLBZ] soil metagenome; soil from tomato rhizosphere
699
775
+
Arg
CCT
[ENA]
¡û
>WENV180298056
OBJA01154338
[OBJA] soil metagenome; sediment, water from around vicinity
327
251
-
Arg
CCT
[ENA]
¡û
>W141076266
ATDO01000063
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
50483
50407
-
Arg
CCT
[ENA]
¡û
>W141078472
ATIB01000085
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
70860
70936
+
Arg
CCT
[ENA]
¡û
>W141285102
JANF02000081
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
161027
160951
-
Arg
CCT
[ENA]
¡û
>WENV183730412
PJTS01000009
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
184649
184573
-
Arg
CCT
[ENA]
¡û
>WENV183731577
PJTT01000032
[PJTT] soil metagenome; Soil (2) enriched on wood chips
184649
184573
-
Arg
CCT
[ENA]
¡û
>W141400518
JDRU02000010
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
33951
33875
-
Arg
CCT
[ENA]
¡û
>C181003263
AP017655
Alphaproteobacteria
Sphingobium cloacae JCM 10874 [AP017655]
1667002
1666926
-
Arg
CCT
-
¡û
>W1810789389
QRGP01000001
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
428770
428846
+
Arg
CCT
[ENA]
¡û
>W2010559920
JAASQN010000004
Alphaproteobacteria
Sphingopyxis panaciterrae DSM 27164 [JAASQN]
402067
401991
-
Arg
CCT
[ENA]
¡û
>W2010668019
JACBZE010000001
Alphaproteobacteria
Sphingobium francense DSM 26779 [JACBZE]
974703
974627
-
Arg
CCT
[ENA]
¡û
>W2010731292
JACIIY010000001
Alphaproteobacteria
Sphingobium wenxiniae JZ-1 [JACIIY]
214567
214643
+
Arg
CCT
[ENA]
¡û
>W2011539318
SCNQ01000135
Alphaproteobacteria
Sphingomonadaceae bacterium 3R27B10 [SCNQ]
351
275
-
Arg
CCT
[ENA]
¡û
>W2011539436
SCNT01000015
Alphaproteobacteria
Sphingomonadaceae bacterium 3R27E2-A [SCNT]
46352
46428
+
Arg
CCT
[ENA]
¡û
>W2011556255
SEOM01000001
Alphaproteobacteria
Sphingobium francense DSM 26779 [SEOM]
322204
322280
+
Arg
CCT
[ENA]
¡û
>W2011858059
UNRC01000004
Alphaproteobacteria
Sphingorhabdus sp. Alg239-R122 [UNRC]
105225
105149
-
Arg
CCT
[ENA]
¡û
>W2012081425
VLKK01000001
Alphaproteobacteria
Sphingobium wenxiniae CGMCC 1.7748 [VLKK]
280765
280689
-
Arg
CCT
[ENA]
¡û
>W2012439392
WTYS01000001
Alphaproteobacteria
Altererythrobacter gangjinensis JCM 17802 [WTYS]
1817302
1817378
+
Arg
CCT
[ENA]
¡û
>W2012439536
WTYV01000004
Alphaproteobacteria
Altererythrobacter buctensis M0322 [WTYV]
198143
198067
-
Arg
CCT
[ENA]
¡û
>W2110031203
BMMC01000001
Alphaproteobacteria
Sphingopyxis bauzanensis CGMCC 1.8959 [BMMC]
276139
276215
+
Arg
CCT
[ENA]
¡û
>C201257415
CP053015
Alphaproteobacteria
Sphingomonas sp. CSW-10 [CP053015]
1710037
1710113
+
Arg
CCT
-
¡û
>C211138010
CP060725
Alphaproteobacteria
Sphingopyxis sp. OPL5 [CP060725]
1316070
1315994
-
Arg
CCT
-
¡û
>C231486614
CP104207
Alphaproteobacteria
Sphingopyxis sp. PET50 [CP104207]
243117
243193
+
Arg
CCT
-
¡û
>C10111678
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2654377
2654301
-
Arg
CCT
[Ensembl]
¡û
>W1510757078
JACV01000017
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
53074
52998
-
Arg
CCT
[ENA]
¡û
>W1511221225
JNFD01000046
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
10011
9935
-
Arg
CCT
[ENA]
¡û
>W1511324670
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
1429226
1429150
-
Arg
CCT
[ENA]
¡û
>C161021374
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
460377
460453
+
Arg
CCT
[Ensembl]
¡û
>C161043668
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
3381253
3381177
-
Arg
CCT
[Ensembl]
¡û
>C161055643
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
461808
461884
+
Arg
CCT
-
¡û
>W121071138
AJXQ01000072
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
98685
98761
+
Arg
CCT
[ENA]
¡û
>W1610727202
LMGF01000002
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
168123
168047
-
Arg
CCT
[ENA]
¡û
>W1610771349
LNSB01000055
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
17444
17520
+
Arg
CCT
[ENA]
¡û
>W1610771383
LNSC01000039
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
43693
43617
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK