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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173121 (12 seq.)
>W1711340697
MCBV01000018
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCBV]
24117
24192
+
Arg
CCT
[ENA]
¡û
>W1711340730
MCBW01000015
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCBW]
37432
37357
-
Arg
CCT
[ENA]
¡û
>W1711340770
MCBX01000018
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCBX]
37444
37369
-
Arg
CCT
[ENA]
¡û
>W1711340807
MCBY01000018
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCBY]
24107
24182
+
Arg
CCT
[ENA]
¡û
>W1711340844
MCBZ01000031
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCBZ]
11636
11711
+
Arg
CCT
[ENA]
¡û
>W1711340877
MCCA01000110
Gammaproteobacteria
Candidatus Marithrix sp. Canyon 246 [MCCA]
1918
1843
-
Arg
CCT
[ENA]
¡û
>WENV181313249
OFJF01006437
[OFJF] marine metagenome; seawater
279
203
-
Arg
CCT
[ENA]
¡û
>WENV181314518
OFJK01008130
[OFJK] marine metagenome; seawater
176
100
-
Arg
CCT
[ENA]
¡û
>WENV181320427
OFKG01026025
[OFKG] marine metagenome; seawater
51
127
+
Arg
CCT
[ENA]
¡û
>WENV170277574
CERQ01002366
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
90
166
+
Arg
CCT
[ENA]
¡û
>WENV170482580
CEVM01042214
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
226
150
-
Arg
CCT
[ENA]
¡û
>WENV170611003
FUWD012168036
[FUWD] metagenome; unknown
249
325
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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