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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173207 (24 seq.)
>W1710899475
LNIZ01000003
Actinomycetota
Trueperella bernardiae [LNIZ]
8654
8730
+
Lys
TTT
[ENA]
¡û
>W1711184922
LWMY01000008
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
8510
8586
+
Lys
TTT
[ENA]
¡û
>W1711185076
LWNB01000032
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
8510
8586
+
Lys
TTT
[ENA]
¡û
>W1711772091
MVGS01000087
Actinomycetota
Trueperella pyogenes [MVGS]
15124
15200
+
Lys
TTT
[ENA]
¡û
>W141284189
JALQ01000044
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
17334
17408
+
Lys
TTT
[ENA]
¡û
>WENV170552303
CXWJ01053875
[CXWJ] wastewater metagenome; activated sludge
2835
2911
+
Lys
TTT
[ENA]
¢þ
>C181168808
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
1901911
1901987
+
Lys
TTT
-
¡û
>C181171305
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
645867
645791
-
Lys
TTT
-
¡û
>C181171523
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
1066615
1066539
-
Lys
TTT
-
¡û
>C181212683
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
1956174
1956248
+
Lys
TTT
-
¡û
>C191114701
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
2149447
2149523
+
Lys
TTT
-
¡û
>C191114736
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1213689
1213765
+
Lys
TTT
-
¡û
>C191114808
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1620003
1619927
-
Lys
TTT
-
¡û
>C191114830
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
1875058
1875134
+
Lys
TTT
-
¡û
>C191211524
LR134476
Actinomycetota
Trueperella bialowiezensis NCTC13354 [LR134476]
1419015
1419090
+
Lys
TTT
-
¡û
>W1810085257
PESV01000003
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
130708
130632
-
Lys
TTT
[ENA]
¡û
>W1810187913
PKHY01000002
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
110116
110192
+
Lys
TTT
[ENA]
¡û
>W1810484115
QASM01000015
Actinomycetota
Trueperella pyogenes SH01 [QASM]
102
26
-
Lys
TTT
[ENA]
¡û
>C151015784
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
2003725
2003649
-
Lys
TTT
[Ensembl]
¡û
>C151026361
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
1901997
1902073
+
Lys
TTT
[Ensembl]
¡û
>C151096889
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
364467
364391
-
Lys
TTT
-
¡û
>C10100488
CP002045
Actinomycetota
Arcanobacterium haemolyticum DSM 20595 [CP002045]
255881
255805
-
Lys
TTT
[Ensembl]
¡û
>W1610759878
LNIZ01000003
Actinomycetota
Trueperella bernardiae [LNIZ]
8654
8730
+
Lys
TTT
[ENA]
¡û
>W1710743614
LGYI01000002
Actinomycetota
Trueperella bernardiae [LGYI]
109869
109945
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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