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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173491 (10 seq.)
>W1711402568
MFSD01000045
Unclassified
Candidatus Moranbacteria bacterium RIFOXYA1_FULL_44_8 [MFSD]
2046
1970
-
Val
TAC
[ENA]
¡û
>W1711402711
MFSH01000016
Unclassified
Candidatus Moranbacteria bacterium RIFOXYB1_FULL_43_19 [MFSH]
31946
32021
+
Val
TAC
[ENA]
¡û
>W1711402748
MFSI01000013
Unclassified
Candidatus Moranbacteria bacterium RIFOXYB1_FULL_44_23 [MFSI]
111837
111913
+
Val
TAC
[ENA]
¡û
>W1711402832
MFSK01000018
Unclassified
Candidatus Moranbacteria bacterium RIFOXYC1_FULL_44_13 [MFSK]
17517
17592
+
Val
TAC
[ENA]
¡û
>W1711402869
MFSL01000023
Unclassified
Candidatus Moranbacteria bacterium RIFOXYC1_FULL_44_8 [MFSL]
4760
4684
-
Val
TAC
[ENA]
¡û
>W1711402930
MFSN01000005
Unclassified
Candidatus Moranbacteria bacterium RIFOXYD1_FULL_44_12 [MFSN]
31774
31849
+
Val
TAC
[ENA]
¡û
>W1711402980
MFSO01000036
Unclassified
Candidatus Moranbacteria bacterium RIFOXYD1_FULL_44_9 [MFSO]
2373
2297
-
Val
TAC
[ENA]
¡û
>W1511603901
LBYD01000002
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWC2_40_12 bacterium GW2011_GWC2_40_12 [LBYD]
235664
235740
+
Val
TAC
[ENA]
¡û
>W1511611214
LCHJ01000014
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWF2_44_10 bacterium GW2011_GWF2_44_10 [LCHJ]
12390
12466
+
Val
TAC
[ENA]
¡û
>W1511613683
LCKP01000001
Unclassified
Candidatus Moranbacteria bacterium GW2011_GWC1_45_18 bacterium GW2011_GWC1_45_18 [LCKP]
157033
156957
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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