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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173826 (26 seq.)
>W1711723510
MTPJ01000020
Thermodesulfobacteriota
Lawsonia intracellularis [MTPJ]
20936
21012
+
Met
CAT
[ENA]
¡û
>W131099178
AOSV01000003
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
393438
393514
+
Met
CAT
[ENA]
¡û
>W131236049
AULZ01000011
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
84316
84392
+
Met
CAT
[ENA]
¡û
>C011824
AM180252
Thermodesulfobacteriota
Lawsonia intracellularis PHE/MN1-00 [AM180252]
1453676
1453752
+
Met
CAT
[Ensembl]
¡û
>WENV180828925
ODKA01035022
[ODKA] human metagenome; G_DNA_Stool
850
774
-
Met
CAT
[ENA]
¢þ
>WENV181714850
OGPR01007600
[OGPR] human gut metagenome; faeces
2747
2671
-
Met
CAT
[ENA]
¢þ
>WENV182710830
OJPD01001579
[OJPD] human gut metagenome; stool sample
7558
7634
+
Met
CAT
[ENA]
¢þ
>WENV182727755
OJPW01000160
[OJPW] human gut metagenome; stool sample
5784
5708
-
Met
CAT
[ENA]
¢þ
>WENV170715521
LQAB01004035
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
266
342
+
Met
CAT
[ENA]
¢þ
>WENV170715568
LQAB01005867
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
1918
1842
-
Met
CAT
[ENA]
¢þ
>WENV170715773
LQAB01014734
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
490
414
-
Met
CAT
[ENA]
¢þ
>WENV170715916
LQAB01020321
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
155
231
+
Met
CAT
[ENA]
¢þ
>C181081042
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
1384268
1384344
+
Met
CAT
-
¡û
>W09118220
ACCT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
343061
343137
+
Met
CAT
[ENA]
¡û
>W1910020657
BDUJ01000001
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
1138615
1138539
-
Met
CAT
[ENA]
¡û
>C09103853
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
1696274
1696198
-
Met
CAT
[Ensembl]
¡û
>C09104371
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
445427
445503
+
Met
CAT
[Ensembl]
¡û
>W1810707527
QNHM01000002
Thermodesulfobacteriota
Lawsonia intracellularis Ib2/JPN [QNHM]
656881
656805
-
Met
CAT
[ENA]
¡û
>W1810707569
QNHN01000002
Thermodesulfobacteriota
Lawsonia intracellularis Ni/JPN [QNHN]
657176
657100
-
Met
CAT
[ENA]
¡û
>W1810707611
QNHO01000002
Thermodesulfobacteriota
Lawsonia intracellularis Fu/JPN [QNHO]
657133
657057
-
Met
CAT
[ENA]
¡û
>W1810792917
QRJJ01000001
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
289715
289791
+
Met
CAT
[ENA]
¡û
>W11162715
AFHE01000002
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
2691284
2691208
-
Met
CAT
[ENA]
¡û
>W11178804
AGFG01000008
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
77766
77842
+
Met
CAT
[ENA]
¡û
>C131011819
CP004029
Thermodesulfobacteriota
Lawsonia intracellularis N343 [CP004029]
1453624
1453700
+
Met
CAT
[Ensembl]
¡û
>W1710515589
FNBX01000004
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
84165
84089
-
Met
CAT
[ENA]
¡û
>W1710579879
FPIW01000053
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
19734
19810
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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