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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173961 (83 seq.)
>W1710897161
LNHT01000093
Gammaproteobacteria
Proteus mirabilis [LNHT]
181134
181058
-
Met
CAT
[ENA]
¡û
>W1711005364
LQNN01000008
Gammaproteobacteria
Proteus mirabilis [LQNN]
157575
157499
-
Met
CAT
[ENA]
¡û
>W1711005432
LQNO01000008
Gammaproteobacteria
Proteus mirabilis [LQNO]
44377
44301
-
Met
CAT
[ENA]
¡û
>W1711010030
LQQZ01000034
Gammaproteobacteria
Proteus mirabilis [LQQZ]
2539
2615
+
Met
CAT
[ENA]
¡û
>W1711025556
LRCB01000118
Gammaproteobacteria
Klebsiella aerogenes [LRCB]
52457
52530
+
Met
CAT
[ENA]
¡û
>W1711115654
LUAI01000071
Gammaproteobacteria
Proteus sp. HMSC14B05 [LUAI]
164757
164681
-
Met
CAT
[ENA]
¡û
>W1711120194
LUFT01000001
Gammaproteobacteria
Proteus mirabilis [LUFT]
42
118
+
Met
CAT
[ENA]
¡û
>W1711193301
LWUL01000056
Gammaproteobacteria
Proteus mirabilis [LWUL]
2603
2679
+
Met
CAT
[ENA]
¡û
>W1711193370
LWUM01000046
Gammaproteobacteria
Proteus mirabilis [LWUM]
82
158
+
Met
CAT
[ENA]
¡û
>W1711339050
MBTY01000034
Gammaproteobacteria
Proteus mirabilis [MBTY]
52625
52701
+
Met
CAT
[ENA]
¡û
>W131055311
ANBT01000036
Gammaproteobacteria
Proteus mirabilis C05028 [ANBT]
157044
156968
-
Met
CAT
[ENA]
¡û
>C171103418
CP020052
Gammaproteobacteria
Proteus mirabilis AR_0059 [CP020052]
2092063
2091987
-
Met
CAT
-
¡û
>C171120872
CP021550
Gammaproteobacteria
Proteus mirabilis AR_0159 [CP021550]
3292572
3292496
-
Met
CAT
-
¡û
>C171121729
CP021694
Gammaproteobacteria
Proteus mirabilis AR_0155 [CP021694]
1309653
1309577
-
Met
CAT
-
¡û
>WENV180456526
OBXR01000004
[OBXR] human gut metagenome; faeces
52498
52574
+
fMet
CAT
[ENA]
¢þ
>W141043838
AMGT01000040
Gammaproteobacteria
Proteus mirabilis WGLW6 [AMGT]
244668
244592
-
Met
CAT
[ENA]
¡û
>W141043873
AMGU01000005
Gammaproteobacteria
Proteus mirabilis WGLW4 [AMGU]
162877
162801
-
Met
CAT
[ENA]
¡û
>WENV182798702
OJTN01000003
[OJTN] human gut metagenome; human gut
53044
53120
+
fMet
CAT
[ENA]
¢þ
>WENV182809969
OJWU01000703
[OJWU] human gut metagenome; human gut
2967
2891
-
fMet
CAT
[ENA]
¢þ
>C08007497
AM942759
Gammaproteobacteria
Proteus mirabilis HI4320 [AM942759]
2506595
2506671
+
Met
CAT
[Ensembl]
¡û
>C181023297
CP017082
Gammaproteobacteria
Proteus mirabilis T21 [CP017082]
2077991
2077915
-
Met
CAT
-
¡û
>C181023374
CP017085
Gammaproteobacteria
Proteus mirabilis T18 [CP017085]
3564115
3564191
+
Met
CAT
-
¡û
>C181125728
CP026044
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [CP026044]
495726
495650
-
Met
CAT
-
¡û
>C181126079
CP026051
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [CP026051]
1569388
1569464
+
Met
CAT
-
¡û
>C181126479
CP026059
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [CP026059]
2997060
2997136
+
Met
CAT
-
¡û
>C181126604
CP026062
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [CP026062]
740863
740787
-
Met
CAT
-
¡û
>C181174904
CP029133
Gammaproteobacteria
Proteus mirabilis AR379 [CP029133]
184773
184697
-
Met
CAT
-
¡û
>C181184274
CP029725
Gammaproteobacteria
Proteus mirabilis AR_0029 [CP029725]
3867897
3867821
-
Met
CAT
-
¡û
>C191119005
CP034090
Gammaproteobacteria
Proteus mirabilis PmSC1111 [CP034090]
106490
106414
-
Met
CAT
-
¡û
>C191119051
CP034091
Gammaproteobacteria
Proteus mirabilis PmBC1123 [CP034091]
3088340
3088416
+
Met
CAT
-
¡û
>C191199980
LR134205
Gammaproteobacteria
Proteus mirabilis NCTC4199 [LR134205]
3037007
3037083
+
Met
CAT
-
¡û
>W141790127
JOVJ01000015
Gammaproteobacteria
Proteus mirabilis [JOVJ]
52559
52635
+
Met
CAT
[ENA]
¡û
>W09127725
ACLE01000064
Gammaproteobacteria
Proteus mirabilis ATCC 29906 [ACLE]
52317
52393
+
Met
CAT
[ENA]
¡û
>C141003314
CP004022
Gammaproteobacteria
Proteus mirabilis BB2000 [CP004022]
2644278
2644354
+
Met
CAT
[Ensembl]
¡û
>W1910857154
NBUS01000033
Gammaproteobacteria
Vibrio fujianensis FJ201301 [NBUS]
25283
25359
+
Met
CAT
[ENA]
¡û
>W1911078619
NMXP01000078
Gammaproteobacteria
Shigella flexneri FC420 [NMXP]
132
55
-
Met
CAT
[ENA]
¡û
>W1911137220
NOWA01000011
Gammaproteobacteria
Proteus mirabilis PM187 [NOWA]
52631
52707
+
Met
CAT
[ENA]
¡û
>W1911770159
QXIN01000011
Gammaproteobacteria
Proteus mirabilis PMWJ [QXIN]
52835
52911
+
Met
CAT
[ENA]
¡û
>W1810011611
BGKS01000019
Gammaproteobacteria
Proteus mirabilis TUM11567 [BGKS]
15174
15250
+
Met
CAT
[ENA]
¡û
>W1810011690
BGKT01000013
Gammaproteobacteria
Proteus mirabilis TUM11568 [BGKT]
47185
47109
-
Met
CAT
[ENA]
¡û
>W1810011817
BGKV01000002
Gammaproteobacteria
Proteus mirabilis TUM11570 [BGKV]
183706
183630
-
Met
CAT
[ENA]
¡û
>W1810011920
BGKW01000005
Gammaproteobacteria
Proteus mirabilis TUM11571 [BGKW]
52508
52584
+
Met
CAT
[ENA]
¡û
>W1810014409
BGMB01000004
Gammaproteobacteria
Proteus mirabilis TUM4660 [BGMB]
52594
52670
+
Met
CAT
[ENA]
¡û
>W1810189016
PKIT01000003
Gammaproteobacteria
Proteus mirabilis UMB0315 [PKIT]
52725
52801
+
Met
CAT
[ENA]
¡û
>W1810340541
PUXR01000001
Gammaproteobacteria
Proteus mirabilis PmPHI [PUXR]
246289
246213
-
Met
CAT
[ENA]
¡û
>W1810535016
QDAK01000003
Gammaproteobacteria
Proteus mirabilis AR_0377 [QDAK]
996593
996517
-
Met
CAT
[ENA]
¡û
>W1810595569
QGGA01000003
Gammaproteobacteria
Proteus mirabilis LBUEL-H11 [QGGA]
276689
276613
-
Met
CAT
[ENA]
¡û
>W1810626581
QHLF01000009
Gammaproteobacteria
Proteus mirabilis 11985-2-3 [QHLF]
152094
152018
-
Met
CAT
[ENA]
¡û
>C151096977
CP012674
Gammaproteobacteria
Proteus mirabilis CYPM1 [CP012674]
2972088
2972164
+
Met
CAT
-
¡û
>C151097057
CP012675
Gammaproteobacteria
Proteus mirabilis CYPV1 [CP012675]
2974328
2974404
+
Met
CAT
-
¡û
>W1530026082
JWAP01000031
Gammaproteobacteria
Proteus mirabilis 1166_PMIR [JWAP]
192
265
+
Met
CAT
[ENA]
¡û
>W1511362242
JSCB01000069
Gammaproteobacteria
Proteus mirabilis Pm-Oxa48 [JSCB]
40919
40843
-
Met
CAT
[ENA]
¡û
>W1511394322
JTBA01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [JTBA]
740856
740780
-
Met
CAT
[ENA]
¡û
>W1511394363
JTBB01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [JTBB]
2996879
2996955
+
Met
CAT
[ENA]
¡û
>W1511395686
JTBP01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [JTBP]
1569360
1569436
+
Met
CAT
[ENA]
¡û
>W1511446661
JUXK01000050
Gammaproteobacteria
Proteus mirabilis 68_PMIR [JUXK]
164275
164199
-
Met
CAT
[ENA]
¡û
>W1511452532
JVEH01000061
Gammaproteobacteria
Proteus mirabilis 51_PMIR [JVEH]
164275
164199
-
Met
CAT
[ENA]
¡û
>W1511454118
JVFU01000038
Gammaproteobacteria
Proteus mirabilis 47_PMIR [JVFU]
164195
164119
-
Met
CAT
[ENA]
¡û
>W1511456157
JVHI01000061
Gammaproteobacteria
Proteus mirabilis 430_PMIR [JVHI]
2562
2638
+
Met
CAT
[ENA]
¡û
>W1511456203
JVHK01000014
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
152780
152704
-
Met
CAT
[ENA]
¡û
>W1511456970
JVHX01000101
Gammaproteobacteria
Proteus mirabilis 418_PMIR [JVHX]
87999
87923
-
Met
CAT
[ENA]
¡û
>W1511458700
JVJQ01000119
Gammaproteobacteria
Proteus mirabilis 373_PMIR [JVJQ]
42349
42273
-
Met
CAT
[ENA]
¡û
>W1511468401
JVUE01000067
Gammaproteobacteria
Proteus mirabilis 1313_PMIR [JVUE]
43986
43910
-
Met
CAT
[ENA]
¡û
>W1511470086
JVWE01000001
Gammaproteobacteria
Proteus mirabilis 127_PMIR [JVWE]
162605
162529
-
Met
CAT
[ENA]
¡û
>W1511474585
JWBY01000144
Gammaproteobacteria
Proteus mirabilis 1134_PMIR [JWBY]
217
293
+
Met
CAT
[ENA]
¡û
>W1511475116
JWCS01000135
Gammaproteobacteria
Proteus mirabilis 1114_PMIR [JWCS]
217
293
+
Met
CAT
[ENA]
¡û
>W1610575890
LAGU01000039
Gammaproteobacteria
Proteus mirabilis [LAGU]
153967
153891
-
Met
CAT
[ENA]
¡û
>W1610610421
LGAY01000079
Gammaproteobacteria
Proteus mirabilis [LGAY]
2703
2779
+
Met
CAT
[ENA]
¡û
>W1610617207
LGTA01000009
Gammaproteobacteria
Proteus mirabilis [LGTA]
31
107
+
Met
CAT
[ENA]
¡û
>W1610757565
LNHT01000093
Gammaproteobacteria
Proteus mirabilis [LNHT]
181134
181058
-
Met
CAT
[ENA]
¡û
>W1610856014
LQNN01000008
Gammaproteobacteria
Proteus mirabilis [LQNN]
157575
157499
-
Met
CAT
[ENA]
¡û
>W1610856082
LQNO01000008
Gammaproteobacteria
Proteus mirabilis [LQNO]
44377
44301
-
Met
CAT
[ENA]
¡û
>W1610858550
LQQZ01000034
Gammaproteobacteria
Proteus mirabilis [LQQZ]
2539
2615
+
Met
CAT
[ENA]
¡û
>W1610873668
LRCB01000118
Gammaproteobacteria
Klebsiella aerogenes [LRCB]
52457
52530
+
Met
CAT
[ENA]
¡û
>W1610994016
LWUL01000056
Gammaproteobacteria
Proteus mirabilis [LWUL]
2603
2679
+
Met
CAT
[ENA]
¡û
>W1610994085
LWUM01000046
Gammaproteobacteria
Proteus mirabilis [LWUM]
82
158
+
Met
CAT
[ENA]
¡û
>W1730036361
MXDG01000035
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar 4 [MXDG]
58736
58809
+
Met
CAT
[ENA]
¡û
>W1730036394
MXDX01000030
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Heidelberg [MXDX]
58766
58839
+
Met
CAT
[ENA]
¡û
>W1730038081
NABH01000008
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport [NABH]
180832
180758
-
Met
CAT
[ENA]
¡û
>W1710563234
FOPN01000007
Gammaproteobacteria
Proteus mirabilis [FOPN]
52779
52855
+
Met
CAT
[ENA]
¡û
>W1710694154
LAGU01000039
Gammaproteobacteria
Proteus mirabilis [LAGU]
153967
153891
-
Met
CAT
[ENA]
¡û
>W1710731927
LGAY01000079
Gammaproteobacteria
Proteus mirabilis [LGAY]
2703
2779
+
Met
CAT
[ENA]
¡û
>W1710742821
LGTA01000009
Gammaproteobacteria
Proteus mirabilis [LGTA]
31
107
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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