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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17412 (102 seq.)
>W1711710975
MTAA01000030
Betaproteobacteria
Neisseria dumasiana 114725 [MTAA]
399
309
-
Ser
GGA
[ENA]
¡û
>W1711711062
MTAC01000018
Betaproteobacteria
Neisseria dumasiana 93087 [MTAC]
35503
35593
+
Ser
GGA
[ENA]
¡û
>W1711712008
MTBL01000007
Betaproteobacteria
Neisseria canis [MTBL]
26011
26101
+
Ser
GGA
[ENA]
¡û
>W1711712060
MTBM01000004
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
196581
196671
+
Ser
GGA
[ENA]
¡û
>W1711712162
MTBO01000023
Betaproteobacteria
Neisseria dentiae [MTBO]
17595
17505
-
Ser
GGA
[ENA]
¡û
>W1711769115
MVDP01000055
Betaproteobacteria
Snodgrassella alvi [MVDP]
71170
71080
-
Ser
GGA
[ENA]
¡û
>W1711931281
NAGW01000084
Betaproteobacteria
Snodgrassella alvi [NAGW]
65619
65529
-
Ser
GGA
[ENA]
¡û
>W1711931326
NAGX01000178
Betaproteobacteria
Snodgrassella alvi [NAGX]
13658
13568
-
Ser
GGA
[ENA]
¡û
>W1711931387
NAGY01000055
Betaproteobacteria
Snodgrassella alvi [NAGY]
68803
68713
-
Ser
GGA
[ENA]
¡û
>W1711931423
NAGZ01000101
Betaproteobacteria
Snodgrassella alvi [NAGZ]
2849
2939
+
Ser
GGA
[ENA]
¡û
>W1711931474
NAHA01000069
Betaproteobacteria
Snodgrassella alvi [NAHA]
36023
35933
-
Ser
GGA
[ENA]
¡û
>W1711931539
NAHB01000052
Betaproteobacteria
Snodgrassella alvi [NAHB]
105815
105725
-
Ser
GGA
[ENA]
¡û
>W1711931553
NAHC01000016
Betaproteobacteria
Snodgrassella alvi [NAHC]
2835
2925
+
Ser
GGA
[ENA]
¡û
>W1711931634
NAHD01000066
Betaproteobacteria
Snodgrassella alvi [NAHD]
4209
4299
+
Ser
GGA
[ENA]
¡û
>W1711931679
NAHE01000089
Betaproteobacteria
Snodgrassella alvi [NAHE]
3108
3198
+
Ser
GGA
[ENA]
¡û
>W1711931736
NAHF01000097
Betaproteobacteria
Snodgrassella alvi [NAHF]
2729
2819
+
Ser
GGA
[ENA]
¡û
>W1711931780
NAHG01000121
Betaproteobacteria
Snodgrassella alvi [NAHG]
12823
12733
-
Ser
GGA
[ENA]
¡û
>W1711931833
NAHH01000050
Betaproteobacteria
Snodgrassella alvi [NAHH]
4270
4360
+
Ser
GGA
[ENA]
¡û
>W1711931893
NAHI01000068
Betaproteobacteria
Snodgrassella alvi [NAHI]
68428
68338
-
Ser
GGA
[ENA]
¡û
>W1711931946
NAHJ01000056
Betaproteobacteria
Snodgrassella alvi [NAHJ]
84165
84075
-
Ser
GGA
[ENA]
¡û
>W1711932006
NAHK01000128
Betaproteobacteria
Snodgrassella alvi [NAHK]
6068
6158
+
Ser
GGA
[ENA]
¡û
>W1711932027
NAHL01000055
Betaproteobacteria
Snodgrassella alvi [NAHL]
12734
12644
-
Ser
GGA
[ENA]
¡û
>W1711932162
NAHN01000079
Betaproteobacteria
Snodgrassella alvi [NAHN]
2942
3032
+
Ser
GGA
[ENA]
¡û
>W1711932213
NAHO01000037
Betaproteobacteria
Snodgrassella alvi [NAHO]
262981
262891
-
Ser
GGA
[ENA]
¡û
>W1711932227
NAHP01000036
Betaproteobacteria
Snodgrassella alvi [NAHP]
12751
12661
-
Ser
GGA
[ENA]
¡û
>W131221606
AUAP01000018
Betaproteobacteria
Conchiformibius kuhniae DSM 17694 [AUAP]
39747
39657
-
Ser
GGA
[ENA]
¡û
>WENV180734317
ODGZ01005501
[ODGZ] human metagenome; G_DNA_Supragingival plaque
4186
4096
-
Ser
GGA
[ENA]
¢þ
>WENV180751337
ODHS01043570
[ODHS] human metagenome; G_DNA_Supragingival plaque
416
506
+
Ser
GGA
[ENA]
¢þ
>WENV180787486
ODIS01007023
[ODIS] human metagenome; G_DNA_Supragingival plaque
1707
1617
-
Ser
GGA
[ENA]
¢þ
>WENV180796745
ODJB01012239
[ODJB] human metagenome; G_DNA_Supragingival plaque
3090
3000
-
Ser
GGA
[ENA]
¢þ
>WENV180814117
ODJO01007569
[ODJO] human metagenome; G_DNA_Supragingival plaque
402
492
+
Ser
GGA
[ENA]
¢þ
>WENV180824262
ODJX01002126
[ODJX] human metagenome; G_DNA_Supragingival plaque
882
972
+
Ser
GGA
[ENA]
¢þ
>WENV180933446
ODTR01000215
[ODTR] human metagenome; G_DNA_Supragingival plaque
31692
31782
+
Ser
GGA
[ENA]
¢þ
>WENV180944543
ODUC01022016
[ODUC] human metagenome; G_DNA_Supragingival plaque
12
102
+
Ser
GGA
[ENA]
¢þ
>WENV181009003
ODWE01023594
[ODWE] human metagenome; G_DNA_Supragingival plaque
38
128
+
Ser
GGA
[ENA]
¢þ
>WENV181091421
OEBC01032128
[OEBC] human metagenome; G_DNA_Supragingival plaque
233
323
+
Ser
GGA
[ENA]
¢þ
>WENV181107169
OEEI01002792
[OEEI] human metagenome; G_DNA_Supragingival plaque
2297
2387
+
Ser
GGA
[ENA]
¢þ
>WENV181179183
OEJT01001779
[OEJT] human metagenome; G_DNA_Supragingival plaque
424
514
+
Ser
GGA
[ENA]
¢þ
>W141282543
JAIK01000388
Betaproteobacteria
Snodgrassella alvi SCGC AB-598-O11 [JAIK]
28277
28187
-
Ser
GGA
[ENA]
¡û
>W141282578
JAIL01000252
Betaproteobacteria
Snodgrassella alvi SCGC AB-598-O02 [JAIL]
38206
38296
+
Ser
GGA
[ENA]
¡û
>WENV183508180
OMHB01005291
[OMHB] human oral metagenome; human oral
235
323
+
Ser
GGA
[ENA]
¢þ
>WENV183508238
OMHC01000323
[OMHC] human oral metagenome; human oral
4067
3977
-
Ser
GGA
[ENA]
¢þ
>WENV183509256
OMHH01002263
[OMHH] human oral metagenome; human oral
426
516
+
Ser
GGA
[ENA]
¢þ
>W141485882
JFZV01000005
Betaproteobacteria
Snodgrassella communis alvi [JFZV]
72895
72805
-
Ser
GGA
[ENA]
¡û
>W141485956
JFZW01000006
Betaproteobacteria
Snodgrassella communis alvi [JFZW]
79293
79203
-
Ser
GGA
[ENA]
¡û
>C181213187
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
1530757
1530847
+
Ser
GGA
-
¡û
>C181224104
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
1328843
1328933
+
Ser
GGA
-
¡û
>C191205910
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
2026533
2026443
-
Ser
GGA
-
¡û
>C191214448
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
102284
102374
+
Ser
GGA
-
¡û
>W141562965
JHZP01000013
Betaproteobacteria
Conchiformibius steedae DSM 2580 [JHZP]
7961
8051
+
Ser
GGA
[ENA]
¡û
>W1910694857
MDUY01000052
Betaproteobacteria
Snodgrassella communis Gris2-3-4 [MDUY]
109654
109744
+
Ser
GGA
[ENA]
¡û
>W1910694909
MDUZ01000118
Betaproteobacteria
Snodgrassella alvi Pens2-2-5 [MDUZ]
25398
25488
+
Ser
GGA
[ENA]
¡û
>W1910694952
MDVA01000035
Betaproteobacteria
Snodgrassella communis Snod2-1-5 [MDVA]
115834
115924
+
Ser
GGA
[ENA]
¡û
>W1910694999
MDVB01000053
Betaproteobacteria
Snodgrassella alvi App2-2 [MDVB]
6791
6881
+
Ser
GGA
[ENA]
¡û
>W1910695031
MDVC01000013
Betaproteobacteria
Snodgrassella alvi App4-8 [MDVC]
7915
8005
+
Ser
GGA
[ENA]
¡û
>W1910695104
MDVD01000057
Betaproteobacteria
Snodgrassella alvi App6-4 [MDVD]
80300
80210
-
Ser
GGA
[ENA]
¡û
>W1910695184
MDVE01000058
Betaproteobacteria
Snodgrassella communis Fer1-2 [MDVE]
106730
106640
-
Ser
GGA
[ENA]
¡û
>W1910695236
MDVF01000049
Betaproteobacteria
Snodgrassella communis Fer2-2 [MDVF]
71927
71837
-
Ser
GGA
[ENA]
¡û
>W1910695266
MDVG01000045
Betaproteobacteria
Snodgrassella alvi Fer4-2 [MDVG]
197121
197031
-
Ser
GGA
[ENA]
¡û
>W1910695324
MDVH01000027
Betaproteobacteria
Snodgrassella communis Gris1-3 [MDVH]
72664
72574
-
Ser
GGA
[ENA]
¡û
>W1910695395
MDVI01000031
Betaproteobacteria
Snodgrassella communis Gris1-6 [MDVI]
72640
72550
-
Ser
GGA
[ENA]
¡û
>W1910695421
MDVJ01000001
Betaproteobacteria
Snodgrassella communis Gris3-4 [MDVJ]
12532
12442
-
Ser
GGA
[ENA]
¡û
>W1910696335
MEII01000018
Betaproteobacteria
Snodgrassella alvi wkB339 [MEII]
387014
386924
-
Ser
GGA
[ENA]
¡û
>W1910696406
MEIJ01000027
Betaproteobacteria
Snodgrassella alvi wkB332 [MEIJ]
458831
458741
-
Ser
GGA
[ENA]
¡û
>W1910696454
MEIK01000034
Betaproteobacteria
Snodgrassella alvi wkB298 [MEIK]
240858
240948
+
Ser
GGA
[ENA]
¡û
>W1910696515
MEIL01000029
Betaproteobacteria
Snodgrassella alvi wkB273 [MEIL]
560289
560379
+
Ser
GGA
[ENA]
¡û
>W1910696532
MEIM01000001
Betaproteobacteria
Snodgrassella alvi wkB237 [MEIM]
554321
554411
+
Ser
GGA
[ENA]
¡û
>W1910696581
MEIN01000004
Betaproteobacteria
Snodgrassella alvi wkB9 [MEIN]
462663
462753
+
Ser
GGA
[ENA]
¡û
>W1910696659
MEIO01000028
Betaproteobacteria
Snodgrassella alvi WF3-3 [MEIO]
81376
81286
-
Ser
GGA
[ENA]
¡û
>W1910696712
MEIP01000010
Betaproteobacteria
Snodgrassella alvi Ruf1-X [MEIP]
72371
72281
-
Ser
GGA
[ENA]
¡û
>W1910696784
MEIQ01000033
Betaproteobacteria
Snodgrassella communis Occ4-2 [MEIQ]
88636
88546
-
Ser
GGA
[ENA]
¡û
>W1910696856
MEIR01000077
Betaproteobacteria
Snodgrassella alvi Nev4-2 [MEIR]
81240
81150
-
Ser
GGA
[ENA]
¡û
>W1910696899
MEIS01000054
Betaproteobacteria
Snodgrassella alvi Nev3CBA3 [MEIS]
4536
4626
+
Ser
GGA
[ENA]
¡û
>W1910696984
MEIT01000087
Betaproteobacteria
Snodgrassella alvi HK9x [MEIT]
95765
95855
+
Ser
GGA
[ENA]
¡û
>W1910697039
MEIU01000057
Betaproteobacteria
Snodgrassella alvi HK3 [MEIU]
402391
402481
+
Ser
GGA
[ENA]
¡û
>W1910697106
MEIV01000070
Betaproteobacteria
Snodgrassella alvi PEB0171 [MEIV]
78176
78086
-
Ser
GGA
[ENA]
¡û
>W1910697130
MEIW01000053
Betaproteobacteria
Snodgrassella alvi PEB0178 [MEIW]
5134
5224
+
Ser
GGA
[ENA]
¡û
>W1910697179
MEIX01000029
Betaproteobacteria
Snodgrassella alvi MS1-3 [MEIX]
2532
2622
+
Ser
GGA
[ENA]
¡û
>W1911422716
NXEN01000024
Betaproteobacteria
Snodgrassella alvi E1 [NXEN]
71249
71159
-
Ser
GGA
[ENA]
¡û
>W1810227191
POXE01000001
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
126202
126112
-
Ser
GGA
[ENA]
¡û
>W1810227260
POXF01000003
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
123239
123149
-
Ser
GGA
[ENA]
¡û
>W1810227432
POXI01000005
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
77502
77592
+
Ser
GGA
[ENA]
¡û
>W1810228049
POXU01000005
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
140490
140400
-
Ser
GGA
[ENA]
¡û
>W1810603969
QGLS01000009
Betaproteobacteria
Snodgrassella alvi ESL0196 [QGLS]
451316
451406
+
Ser
GGA
[ENA]
¡û
>C151023833
CP007446
Betaproteobacteria
Snodgrassella alvi wkB2 [CP007446]
1048097
1048187
+
Ser
GGA
[Ensembl]
¡û
>C151033108
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
1104149
1104239
+
Ser
GGA
[Ensembl]
¡û
>W10109818
ADBF01000232
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
9689
9779
+
Ser
GGA
[ENA]
¡û
>W11112205
ADBF01000232
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
9689
9779
+
Ser
GGA
[ENA]
¡û
>W1511398384
JTDO01000002
Betaproteobacteria
Neisseria arctica KH1503 [JTDO]
199824
199734
-
Ser
GGA
[ENA]
¡û
>W11175935
AFWQ01000030
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
46624
46534
-
Ser
GGA
[ENA]
¡û
>W11175948
AFWR01000001
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
47171
47081
-
Ser
GGA
[ENA]
¡û
>W11177460
AGAY01000008
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
23950
24040
+
Ser
GGA
[ENA]
¡û
>C161109128
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
844680
844770
+
Ser
GGA
[Ensembl]
¡û
>W1610074174
BCWL01000055
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
6398
6308
-
Ser
GGA
[ENA]
¡û
>W1610514848
FMAP01000001
Betaproteobacteria
Snodgrassella sp. R-53583 [FMAP]
23284
23374
+
Ser
GGA
[ENA]
¡û
>W1610617721
LGYH01000004
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
225798
225888
+
Ser
GGA
[ENA]
¡û
>W1610617967
LGZA01000001
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
188364
188454
+
Ser
GGA
[ENA]
¡û
>W1610867493
LQXR01000004
Betaproteobacteria
Snodgrassella sp. CFCC 13594 [LQXR]
21278
21188
-
Ser
GGA
[ENA]
¡û
>W1710071292
BCWL01000055
Betaproteobacteria
Bergeriella denitrificans NBRC 102155 [BCWL]
6398
6308
-
Ser
GGA
[ENA]
¡û
>W1710500538
FMAP01000001
Betaproteobacteria
Snodgrassella sp. R-53583 [FMAP]
23284
23374
+
Ser
GGA
[ENA]
¡û
>W1710743583
LGYH01000004
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
225798
225888
+
Ser
GGA
[ENA]
¡û
>W1710744142
LGZA01000001
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
188364
188454
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK