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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174265 (62 seq.)
>W1711577335
MNPS01000005
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
51662
51577
-
Tyr
GTA
[ENA]
¡û
>W1711577359
MNPT01000002
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
295478
295393
-
Tyr
GTA
[ENA]
¡û
>C171109025
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
804114
804029
-
Tyr
GTA
-
¡û
>W141224562
BAIN01000018
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
7118
7203
+
Tyr
GTA
[ENA]
¡û
>W141247963
CBLY010000002
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
286839
286924
+
Tyr
GTA
[ENA]
¡û
>WENV170565115
FAOW01032575
[FAOW] marine metagenome; seawater
175
90
-
Tyr
GTA
[ENA]
¡û
>WENV170669497
LAHS01000342
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
282024
281939
-
Tyr
GTA
[ENA]
¡û
>WENV170713901
LNFM01046066
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
715
631
-
Tyr
GTA
[ENA]
¡û
>C191166525
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
587010
586925
-
Tyr
GTA
-
¡û
>W1910182355
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
49787
49702
-
Tyr
GTA
[ENA]
¡û
>W1910697243
MEJG01000003
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
278153
278068
-
Tyr
GTA
[ENA]
¡û
>W1910871836
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
426835
426920
+
Tyr
GTA
[ENA]
¡û
>W1910872322
NDFO01000001
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
27197
27112
-
Tyr
GTA
[ENA]
¡û
>W1910872376
NDFP01000002
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
27197
27112
-
Tyr
GTA
[ENA]
¡û
>W1810044972
LMYH01000003
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
250431
250346
-
Tyr
GTA
[ENA]
¡û
>W1810045054
LMYI01000011
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
63768
63683
-
Tyr
GTA
[ENA]
¡û
>W1810045077
LMYJ01000003
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
250532
250447
-
Tyr
GTA
[ENA]
¡û
>W1810053974
PDEU01000001
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
56399
56314
-
Tyr
GTA
[ENA]
¡û
>W2010095970
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
49787
49702
-
Tyr
GTA
[ENA]
¡û
>W2010100828
BJVT01000005
Alphaproteobacteria
Acetobacter syzygii NBRC 16604 [BJVT]
175614
175699
+
Tyr
GTA
[ENA]
¡û
>W2010703487
JACHIE010000001
Alphaproteobacteria
Acetobacter lovaniensis DSM 4491 [JACHIE]
471792
471877
+
Tyr
GTA
[ENA]
¡û
>W2010830668
MEJG01000003
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
278153
278068
-
Tyr
GTA
[ENA]
¡û
>W2010940566
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
426835
426920
+
Tyr
GTA
[ENA]
¡û
>W2010941025
NDFO01000001
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
27197
27112
-
Tyr
GTA
[ENA]
¡û
>W2010941079
NDFP01000002
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
27197
27112
-
Tyr
GTA
[ENA]
¡û
>W2011138076
NWUS01000002
Alphaproteobacteria
Bombella sp. TMW2.1880 [NWUS]
268897
268812
-
Tyr
GTA
[ENA]
¡û
>W2011187129
PDLY01000003
Alphaproteobacteria
Bombella sp. TMW2.1889 [PDLY]
119950
120035
+
Tyr
GTA
[ENA]
¡û
>W2011971663
VCDI01000002
Alphaproteobacteria
Acetobacteraceae bacterium KEBCLARHB70R [VCDI]
496717
496632
-
Tyr
GTA
[ENA]
¡û
>W2012086261
VLTI01000005
Alphaproteobacteria
Acetobacter peroxydans ATCC 12874 [VLTI]
276763
276678
-
Tyr
GTA
[ENA]
¡û
>W2012327823
WHNS01000006
Alphaproteobacteria
Bombella apis SME1 [WHNS]
120546
120631
+
Tyr
GTA
[ENA]
¡û
>W2012397779
WNIF01000008
Alphaproteobacteria
Bombella sp. ESL0378 [WNIF]
11853
11768
-
Tyr
GTA
[ENA]
¡û
>W2012397875
WNIH01000005
Alphaproteobacteria
Bombella sp. ESL0380 [WNIH]
291073
290988
-
Tyr
GTA
[ENA]
¡û
>W2012397973
WNIJ01000003
Alphaproteobacteria
Bombella sp. ESL0385 [WNIJ]
11772
11687
-
Tyr
GTA
[ENA]
¡û
>W2012398021
WNIK01000006
Alphaproteobacteria
Bombella sp. ESL0387 [WNIK]
332957
332872
-
Tyr
GTA
[ENA]
¡û
>W2012406727
WOSZ01000001
Alphaproteobacteria
Acetobacter peroxydans LMG 1635 [WOSZ]
276512
276427
-
Tyr
GTA
[ENA]
¡û
>W2012406860
WOTC01000001
Alphaproteobacteria
Acetobacter lovaniensis LMG 1617 [WOTC]
471802
471887
+
Tyr
GTA
[ENA]
¡û
>W2012406909
WOTD01000001
Alphaproteobacteria
Acetobacter lambici LMG 27439 [WOTD]
426479
426564
+
Tyr
GTA
[ENA]
¡û
>W2012406957
WOTE01000001
Alphaproteobacteria
Acetobacter ghanensis LMG 23848 [WOTE]
504416
504501
+
Tyr
GTA
[ENA]
¡û
>W2012407049
WOTG01000001
Alphaproteobacteria
Acetobacter fabarum LMG 24244 [WOTG]
419356
419441
+
Tyr
GTA
[ENA]
¡û
>W2110299421
JADAQV010000002
Alphaproteobacteria
Bombella apis MRM1 [JADAQV]
114379
114464
+
Tyr
GTA
[ENA]
¡û
>W2110442575
JAERKS010000006
Alphaproteobacteria
Acetobacter okinawensis Dm-38 [JAERKS]
120275
120360
+
Tyr
GTA
[ENA]
¡û
>W2110442656
JAERKT010000144
Alphaproteobacteria
Acetobacter okinawensis Dm-55 [JAERKT]
2621
2536
-
Tyr
GTA
[ENA]
¡û
>W2110520887
JAFVMG010000001
Alphaproteobacteria
Acetobacter suratthaniensis TBRC 1719 [JAFVMG]
288455
288370
-
Tyr
GTA
[ENA]
¡û
>W2110520929
JAFVMH010000001
Alphaproteobacteria
Acetobacter sp. TBRC 12339 [JAFVMH]
325894
325809
-
Tyr
GTA
[ENA]
¡û
>W2110557851
JAGJTM010000005
Alphaproteobacteria
Bombella apis MRM1 [JAGJTM]
296784
296699
-
Tyr
GTA
[ENA]
¡û
>W2110669427
JAIEUM010000001
Alphaproteobacteria
Acetobacter sp. TBRC 12305 [JAIEUM]
325908
325823
-
Tyr
GTA
[ENA]
¡û
>C211067014
CP046394
Alphaproteobacteria
Bombella sp. ESL0368 [CP046394]
1640335
1640250
-
Tyr
GTA
-
¡û
>C231039186
CP030979
Alphaproteobacteria
Parasaccharibacter sp. TMW 2.1888 [CP030979]
588753
588668
-
Tyr
GTA
-
¡û
>C231322716
CP092734
Alphaproteobacteria
Acetobacteraceae bacterium DM15PD [CP092734]
1489144
1489229
+
Tyr
GTA
-
¡û
>C241080687
CP043506
Alphaproteobacteria
Acetobacter vaccinii KACC 21233 [CP043506]
251858
251943
+
Tyr
GTA
-
¡û
>C241122375
CP047652
Alphaproteobacteria
Aristophania vespae KACC 21507 [CP047652]
313368
313453
+
Tyr
GTA
-
¡û
>W2310007446
BAPB01000014
Alphaproteobacteria
Acetobacter fabarum DSM 19596 [BAPB]
67470
67385
-
Tyr
GTA
[ENA]
¡û
>W2310007485
BAPC01000001
Alphaproteobacteria
Acetobacter ghanensis DSM 18895 [BAPC]
70593
70508
-
Tyr
GTA
[ENA]
¡û
>W2310007580
BAPE01000029
Alphaproteobacteria
Acetobacter lovaniensis NRIC 0474 [BAPE]
200471
200386
-
Tyr
GTA
[ENA]
¡û
>W2310007858
BAPK01000142
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BAPK]
20688
20603
-
Tyr
GTA
[ENA]
¡û
>W2310007958
BAPO01000006
Alphaproteobacteria
Acetobacter syzygii NRIC 0483 [BAPO]
233391
233306
-
Tyr
GTA
[ENA]
¡û
>C161105587
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1255263
1255178
-
Tyr
GTA
[Ensembl]
¡û
>W1610040906
BAMZ01000005
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
25235
25150
-
Tyr
GTA
[ENA]
¡û
>W1710038104
BAMZ01000005
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
25235
25150
-
Tyr
GTA
[ENA]
¡û
>W1710613510
JATM01000002
Alphaproteobacteria
Bombella intestini [JATM]
119372
119457
+
Tyr
GTA
[ENA]
¡û
>W1710624663
JOPD01000002
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
212211
212126
-
Tyr
GTA
[ENA]
¡û
>W1710624880
JOPJ01000006
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
33480
33395
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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