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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174360 (88 seq.)
>W1711422963
MICC01000047
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
39526
39602
+
Thr
TGT
[ENA]
¡û
>W1711422978
MICC01000109
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
30525
30601
+
Thr
TGT
[ENA]
¡û
>W1711423002
MICE01000161
Campylobacterota
Sulfurimonas sp. RIFOXYC2_FULL_36_7 [MICE]
153
77
-
Thr
TGT
[ENA]
¡û
>W1711423017
MICF01000003
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
122697
122773
+
Thr
TGT
[ENA]
¡û
>W1711423045
MICF01000011
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
66718
66794
+
Thr
TGT
[ENA]
¡û
>W1711423060
MICH01000001
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
29631
29707
+
Thr
TGT
[ENA]
¡û
>W1711423075
MICH01000008
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
66733
66809
+
Thr
TGT
[ENA]
¡û
>W1711423097
MICI01000076
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_37_8 [MICI]
2220
2144
-
Thr
TGT
[ENA]
¡û
>W1711423107
MICI01000217
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_37_8 [MICI]
5232
5308
+
Thr
TGT
[ENA]
¡û
>W1711582134
MNUZ01000079
Campylobacterota
Helicobacteraceae bacterium CG1_02_36_14 [MNUZ]
13224
13300
+
Thr
TGT
[ENA]
¡û
>W1711584517
MNYP01000009
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
6042
6118
+
Thr
TGT
[ENA]
¡û
>W1711584543
MNYP01000147
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
14334
14258
-
Thr
TGT
[ENA]
¡û
>C025428
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
342504
342580
+
Thr
TGT
[Ensembl]
¡û
>C025452
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
1791908
1791984
+
Thr
TGT
[Ensembl]
¡û
>WENV180099256
NKAJ01000959
[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
5138
5062
-
Thr
TGT
[ENA]
¡û
>WENV180099257
NKAJ01000959
[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
4935
4859
-
Thr
TGT
[ENA]
¡û
>WENV180242055
OBDI01068925
[OBDI] metagenome; diffuse fluid
154
230
+
Thr
TGT
[ENA]
¡û
>WENV180275470
OBHT01043041
[OBHT] metagenome; hydrothermal vent
174
98
-
Thr
TGT
[ENA]
¡û
>WENV180277083
OBHV01054092
[OBHV] metagenome; water
98
174
+
Thr
TGT
[ENA]
¡û
>WENV180288046
OBIL01038003
[OBIL] metagenome; hydrothermal vent
97
173
+
Thr
TGT
[ENA]
¡û
>WENV180299496
OBJC01022671
[OBJC] metagenome; water
172
96
-
Thr
TGT
[ENA]
¡û
>WENV180317198
OBKJ01054403
[OBKJ] metagenome; hydrothermal vent
26
102
+
Thr
TGT
[ENA]
¡û
>WENV180345521
OBLN01000495
[OBLN] sediment metagenome; sediment
8511
8587
+
Thr
TGT
[ENA]
¡û
>WENV180581140
OCMH01039333
[OCMH] metagenome; diffuse fluid
222
146
-
Thr
TGT
[ENA]
¡û
>WENV180582231
OCMO01019395
[OCMO] metagenome; diffuse fluid
57
133
+
Thr
TGT
[ENA]
¡û
>WENV180582659
OCMR01038551
[OCMR] metagenome; diffuse fluid
113
189
+
Thr
TGT
[ENA]
¡û
>WENV180583153
OCNB01003934
[OCNB] metagenome; diffuse fluid
290
366
+
Thr
TGT
[ENA]
¡û
>WENV180583581
OCNB01127107
[OCNB] metagenome; diffuse fluid
207
283
+
Thr
TGT
[ENA]
¡û
>WENV180647905
OCSI01023476
[OCSI] metagenome; diffuse fluid
112
188
+
Thr
TGT
[ENA]
¡û
>WENV181206876
OFAW01020292
[OFAW] metagenome; hydrothermal vent
344
420
+
Thr
TGT
[ENA]
¡û
>WENV181208019
OFBA01009467
[OFBA] metagenome; hydrothermal vent
392
468
+
Thr
TGT
[ENA]
¡û
>WENV181208795
OFBC01007596
[OFBC] metagenome; hydrothermal vent
593
517
-
Thr
TGT
[ENA]
¡û
>WENV181209820
OFBF01002517
[OFBF] metagenome; hydrothermal vent
959
883
-
Thr
TGT
[ENA]
¡û
>WENV181210032
OFBG01001625
[OFBG] metagenome; hydrothermal vent
153
77
-
Thr
TGT
[ENA]
¡û
>WENV181210535
OFBH01008183
[OFBH] metagenome; hydrothermal vent
762
686
-
Thr
TGT
[ENA]
¡û
>WENV181210769
OFBI01001364
[OFBI] metagenome; hydrothermal vent
226
302
+
Thr
TGT
[ENA]
¡û
>WENV181211454
OFBK01007790
[OFBK] metagenome; hydrothermal vent
350
426
+
Thr
TGT
[ENA]
¡û
>WENV181211763
OFBL01006296
[OFBL] metagenome; hydrothermal vent
647
571
-
Thr
TGT
[ENA]
¡û
>WENV181214880
OFBY01027829
[OFBY] metagenome; hydrothermal vent
119
195
+
Thr
TGT
[ENA]
¡û
>WENV181216228
OFCB01010915
[OFCB] metagenome; hydrothermal vent
886
810
-
Thr
TGT
[ENA]
¡û
>WENV181224814
OFDG01005837
[OFDG] metagenome; hydrothermal vent
413
337
-
Thr
TGT
[ENA]
¡û
>WENV181225148
OFDH01007789
[OFDH] metagenome; hydrothermal vent
54
130
+
Thr
TGT
[ENA]
¡û
>WENV183515084
OMKS01045462
[OMKS] sediment metagenome; hot spring sediment
1405
1481
+
Thr
TGT
[ENA]
¡û
>WENV183683219
ORMF010549392
[ORMF] groundwater metagenome; groundwater
41438
41514
+
Thr
TGT
[ENA]
¡û
>WENV183693457
ORMF012082822
[ORMF] groundwater metagenome; groundwater
56279
56355
+
Thr
TGT
[ENA]
¡û
>WENV183702733
PDVJ01000005
[PDVJ] alkali sediment metagenome; glacial lake sediment
2055
1979
-
Thr
TGT
[ENA]
¡û
>WENV170005899
AMQJ01003693
[AMQJ] sediment metagenome; subsurface aquifer sediment
1088
1164
+
Thr
TGT
[ENA]
¡û
>WENV170005906
AMQJ01004010
[AMQJ] sediment metagenome; subsurface aquifer sediment
271
347
+
Thr
TGT
[ENA]
¡û
>WENV170005910
AMQJ01004217
[AMQJ] sediment metagenome; subsurface aquifer sediment
3057
3133
+
Thr
TGT
[ENA]
¡û
>WENV170571060
FLOH01000061
[FLOH] marine metagenome; water
234372
234296
-
Thr
TGT
[ENA]
¡û
>WENV170571346
FLOH01000135
[FLOH] marine metagenome; water
156757
156833
+
Thr
TGT
[ENA]
¡û
>WENV170575599
FPHF01000031
[FPHF] hydrothermal vent metagenome genome assembly, contig: NODE_21.; water
19320
19396
+
Thr
TGT
[ENA]
¡û
>WENV170575793
FPHP01000002
[FPHP] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
147813
147889
+
Thr
TGT
[ENA]
¡û
>WENV170604207
FUWD010373934
[FUWD] metagenome; unknown
684
608
-
Thr
TGT
[ENA]
¡û
>WENV170615299
FUWD012853591
[FUWD] metagenome; unknown
4052
4128
+
Thr
TGT
[ENA]
¡û
>WENV170615301
FUWD012853592
[FUWD] metagenome; unknown
237
313
+
Thr
TGT
[ENA]
¡û
>WENV170616016
FUWD012875007
[FUWD] metagenome; unknown
726
650
-
Thr
TGT
[ENA]
¡û
>WENV170619699
FUWD013019285
[FUWD] metagenome; unknown
1924
1848
-
Thr
TGT
[ENA]
¡û
>WENV170627819
FUWD013237682
[FUWD] metagenome; unknown
1924
1848
-
Thr
TGT
[ENA]
¡û
>WENV170640702
JFJP01024015
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
25479
25403
-
Thr
TGT
[ENA]
¡û
>WENV170640725
JFJP01024090
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13592
13668
+
Thr
TGT
[ENA]
¡û
>WENV170640736
JFJP01024266
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1685
1609
-
Thr
TGT
[ENA]
¡û
>WENV170656491
JTFO01019143
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1979
2055
+
Thr
TGT
[ENA]
¡û
>WENV170656758
JTFO01041217
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
463
387
-
Thr
TGT
[ENA]
¡û
>WENV170658402
JTFP01103631
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
898
822
-
Thr
TGT
[ENA]
¡û
>WENV170692899
LGOV01043265
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
269
193
-
Thr
TGT
[ENA]
¡û
>WENV170695713
LGVE01158278
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
147
71
-
Thr
TGT
[ENA]
¡û
>W09103232
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
1053699
1053623
-
Thr
TGT
[ENA]
¡û
>W09103239
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
301542
301466
-
Thr
TGT
[ENA]
¡û
>W09111594
ABXD01000005
Campylobacterota
Sulfurimonas gotlandica GD 1 [ABXD]
170246
170322
+
Thr
TGT
[ENA]
¡û
>W1910744649
MICA01000223
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_34_6 [MICA]
2516
2592
+
Thr
TGT
[ENA]
¡û
>W2010878081
MICA01000223
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_34_6 [MICA]
2516
2592
+
Thr
TGT
[ENA]
¡û
>W2011544797
SDID01000005
Campylobacterota
Sulfurimonas sp. NW8N [SDID]
40678
40754
+
Thr
TGT
[ENA]
¡û
>W2011544799
SDID01000006
Campylobacterota
Sulfurimonas sp. NW8N [SDID]
104288
104212
-
Thr
TGT
[ENA]
¡û
>W2011751835
SZPX01000001
Campylobacterota
Sulfurimonas sp. SN118 [SZPX]
332699
332775
+
Thr
TGT
[ENA]
¡û
>C201092959
CP041166
Campylobacterota
Sulfurimonas sp. 1-1N [CP041166]
238622
238698
+
Thr
TGT
-
¡û
>C211052421
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
245815
245891
+
Thr
TGT
-
¡û
>C211052452
CP041165
Campylobacterota
Sulfurimonas sp. B2 [CP041165]
1787171
1787095
-
Thr
TGT
-
¡û
>C211052461
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
323452
323528
+
Thr
TGT
-
¡û
>C211052639
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
222385
222461
+
Thr
TGT
-
¡û
>C231194005
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
305226
305302
+
Thr
TGT
-
¡û
>C241040221
CP033720
Campylobacterota
Sulfurimonas sp. CVO [CP033720]
1608830
1608754
-
Thr
TGT
-
¡û
>C241042985
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
2041461
2041537
+
Thr
TGT
-
¡û
>C241042992
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
2023672
2023596
-
Thr
TGT
-
¡û
>W1511327824
JQIQ01000001
Campylobacterota
Sulfurovum sp. PC08-66 [JQIQ]
183095
183019
-
Thr
TGT
[ENA]
¡û
>W1511327944
JQIT01000002
Campylobacterota
Sulfuricurvum sp. PC08-66 [JQIT]
183003
182927
-
Thr
TGT
[ENA]
¡û
>C11119320
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
285336
285412
+
Thr
TGT
[Ensembl]
¡û
>W121004867
AFRZ01000001
Campylobacterota
Sulfurimonas gotlandica GD1 [AFRZ]
174353
174429
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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