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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174362 (38 seq.)
>W1711422959
MICC01000002
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
5989
6065
+
Asp
GTC
[ENA]
¡û
>W1711423039
MICF01000010
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
133332
133256
-
Asp
GTC
[ENA]
¡û
>W1711423042
MICF01000010
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
132926
132850
-
Asp
GTC
[ENA]
¡û
>W1711423069
MICH01000006
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
146893
146817
-
Asp
GTC
[ENA]
¡û
>W1711423072
MICH01000006
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
146487
146411
-
Asp
GTC
[ENA]
¡û
>W1711423101
MICI01000113
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_37_8 [MICI]
1343
1267
-
Asp
GTC
[ENA]
¡û
>W1711423103
MICI01000113
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_37_8 [MICI]
988
912
-
Asp
GTC
[ENA]
¡û
>W1711582116
MNUZ01000013
Campylobacterota
Helicobacteraceae bacterium CG1_02_36_14 [MNUZ]
301
225
-
Asp
GTC
[ENA]
¡û
>W1711582131
MNUZ01000073
Campylobacterota
Helicobacteraceae bacterium CG1_02_36_14 [MNUZ]
285
361
+
Asp
GTC
[ENA]
¡û
>C025440
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
810514
810590
+
Asp
GTC
[Ensembl]
¡û
>C025443
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
811014
811090
+
Asp
GTC
[Ensembl]
¡û
>WENV180346319
OBLN01060622
[OBLN] sediment metagenome; sediment
260
336
+
Asp
GTC
[ENA]
¡û
>WENV183696414
ORMF012550850
[ORMF] groundwater metagenome; groundwater
90602
90526
-
Asp
GTC
[ENA]
¡û
>WENV183696417
ORMF012550850
[ORMF] groundwater metagenome; groundwater
90198
90122
-
Asp
GTC
[ENA]
¡û
>WENV170005933
AMQJ01005074
[AMQJ] sediment metagenome; subsurface aquifer sediment
197
121
-
Asp
GTC
[ENA]
¡û
>WENV170640679
JFJP01023938
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
33835
33759
-
Asp
GTC
[ENA]
¡û
>WENV170640698
JFJP01024013
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
41135
41211
+
Asp
GTC
[ENA]
¡û
>WENV170640700
JFJP01024013
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
41598
41674
+
Asp
GTC
[ENA]
¡û
>W09103220
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
2035101
2035025
-
Asp
GTC
[ENA]
¡û
>W09103223
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
2034601
2034525
-
Asp
GTC
[ENA]
¡û
>W1910744550
MIBX01000004
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
10465
10389
-
Asp
GTC
[ENA]
¡û
>W1910744589
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4083
4159
+
Asp
GTC
[ENA]
¡û
>W1910744592
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4733
4809
+
Asp
GTC
[ENA]
¡û
>W1910744622
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
8245
8169
-
Asp
GTC
[ENA]
¡û
>W1910744625
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
7595
7519
-
Asp
GTC
[ENA]
¡û
>W1910744668
MICB01000041
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
2075
2151
+
Asp
GTC
[ENA]
¡û
>W2010877982
MIBX01000004
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
10465
10389
-
Asp
GTC
[ENA]
¡û
>W2010878021
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4083
4159
+
Asp
GTC
[ENA]
¡û
>W2010878024
MIBY01000097
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_02_FULL_36_28 [MIBY]
4733
4809
+
Asp
GTC
[ENA]
¡û
>W2010878054
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
8245
8169
-
Asp
GTC
[ENA]
¡û
>W2010878057
MIBZ01000053
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
7595
7519
-
Asp
GTC
[ENA]
¡û
>W2010878100
MICB01000041
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
2075
2151
+
Asp
GTC
[ENA]
¡û
>W2011751842
SZPX01000002
Campylobacterota
Sulfurimonas sp. SN118 [SZPX]
84302
84378
+
Asp
GTC
[ENA]
¡û
>W2011751845
SZPX01000002
Campylobacterota
Sulfurimonas sp. SN118 [SZPX]
84891
84967
+
Asp
GTC
[ENA]
¡û
>C211052488
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
1588728
1588652
-
Asp
GTC
-
¡û
>C211052491
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
1587858
1587782
-
Asp
GTC
-
¡û
>C231248230
CP087998
Campylobacterota
Sulfurimonas sp. HSL-3221 [CP087998]
1721511
1721587
+
Asp
GTC
-
¡û
>C231248232
CP087998
Campylobacterota
Sulfurimonas sp. HSL-3221 [CP087998]
1723357
1723433
+
Asp
GTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK