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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174372 (18 seq.)
>W1711411004
MGQV01000113
Unclassified
Deltaproteobacteria bacterium RBG_16_58_17 [MGQV]
2844
2768
-
Arg
TCG
[ENA]
¡û
>W1711423156
MICJ01000112
Thermodesulfobacteriota
Syntrophobacterales bacterium GWC2_56_13 [MICJ]
2895
2819
-
Arg
TCG
[ENA]
¡û
>W1711423189
MICK01000165
Thermodesulfobacteriota
Syntrophobacterales bacterium GWF2_56_9 [MICK]
12540
12464
-
Arg
TCG
[ENA]
¡û
>W1711423248
MICO01000391
Thermodesulfobacteriota
Syntrophus sp. RIFOXYC2_FULL_54_9 [MICO]
4947
4871
-
Arg
TCG
[ENA]
¡û
>W1711585373
MNZQ01000079
Thermodesulfobacteriota
Syntrophaceae bacterium CG2_30_58_14 [MNZQ]
11076
11152
+
Arg
TCG
[ENA]
¡û
>WENV180318017
OBKL01030137
[OBKL] soil metagenome; Alaskan Permafrost
160
236
+
Arg
TCG
[ENA]
¡û
>WENV180371050
OBOI01000168
[OBOI] sediment metagenome; sediment
18009
17933
-
Arg
TCG
[ENA]
¡û
>WENV183512338
OMKS01000303
[OMKS] sediment metagenome; hot spring sediment
29443
29519
+
Arg
TCG
[ENA]
¡û
>WENV183661633
ORJL010123650
[ORJL] groundwater metagenome; groundwater
1612
1536
-
Arg
TCG
[ENA]
¡û
>WENV183665732
ORJL010486950
[ORJL] groundwater metagenome; groundwater
5235
5159
-
Arg
TCG
[ENA]
¡û
>WENV183672121
ORJL011137174
[ORJL] groundwater metagenome; groundwater
479
555
+
Arg
TCG
[ENA]
¡û
>WENV183673868
ORJL011327325
[ORJL] groundwater metagenome; groundwater
252
328
+
Arg
TCG
[ENA]
¡û
>WENV183677000
ORJL011697329
[ORJL] groundwater metagenome; groundwater
207
283
+
Arg
TCG
[ENA]
¡û
>WENV183686030
ORMF010938426
[ORMF] groundwater metagenome; groundwater
2782
2858
+
Arg
TCG
[ENA]
¡û
>WENV183689001
ORMF011377558
[ORMF] groundwater metagenome; groundwater
1586
1510
-
Arg
TCG
[ENA]
¡û
>WENV170564063
CZCB01045911
[CZCB] anaerobic digester metagenome; anaerobic digester
1465
1389
-
Arg
TCG
[ENA]
¡û
>WENV170720928
LSQX01171576
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10667
10591
-
Arg
TCG
[ENA]
¡û
>WENV170967684
MTKW01002835
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
78878
78802
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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