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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17450 (96 seq.)
>W1710879696
LMRV01000064
Bacillota
Paenibacillus sp. Soil522 [LMRV]
27593
27504
-
Ser
GCT
[ENA]
¡û
>W1710879725
LMRV01000088
Bacillota
Paenibacillus sp. Soil522 [LMRV]
154281
154191
-
Ser
GCT
[ENA]
¡û
>W1711010059
LQRA01000044
Bacillota
Paenibacillus elgii [LQRA]
187
276
+
Ser
GCT
[ENA]
¡û
>W1711010133
LQRA01000121
Bacillota
Paenibacillus elgii [LQRA]
54241
54152
-
Ser
GCT
[ENA]
¡û
>W131174408
ARIL01000030
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
229303
229214
-
Ser
GCT
[ENA]
¡û
>W1711252458
LYPA01000047
Bacillota
Paenibacillus oryzae [LYPA]
243
332
+
Ser
GCT
[ENA]
¡û
>W1711252493
LYPA01000065
Bacillota
Paenibacillus oryzae [LYPA]
295415
295505
+
Ser
GCT
[ENA]
¡û
>W131227918
AUFO01000008
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
350269
350180
-
Ser
GCT
[ENA]
¡û
>W131235870
AULW01000081
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
769
680
-
Ser
GCT
[ENA]
¡û
>W1711677258
MRTK01000022
Bacillota
Paenibacillus sp. FSL H8-0548 [MRTK]
37482
37392
-
Ser
GCT
[ENA]
¡û
>W1711677310
MRTK01000157
Bacillota
Paenibacillus sp. FSL H8-0548 [MRTK]
89
-1
-
Ser
GCT
[ENA]
¡û
>W1711826987
MXQD01000035
Bacillota
Paenibacillus sp. MY03 [MXQD]
22543
22633
+
Ser
GCT
[ENA]
¡û
>W1711827006
MXQD01000050
Bacillota
Paenibacillus sp. MY03 [MXQD]
83
172
+
Ser
GCT
[ENA]
¡û
>W131000526
AGEN01000034
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
518
608
+
Ser
GCT
[ENA]
¡û
>W131000536
AGEN01000036
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
249771
249861
+
Ser
GCT
[ENA]
¡û
>W131235852
AULW01000071
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
517
427
-
Ser
GCT
[ENA]
¡û
>WENV183734953
PJUA01000222
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
4
93
+
Ser
GCT
[ENA]
¢þ
>WENV183735073
PJUA01000755
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6164
6074
-
Ser
GCT
[ENA]
¢þ
>W141462442
JFHT01000246
Bacillota
Paenibacillus darwinianus [JFHT]
8095
8185
+
Ser
GCT
[ENA]
¡û
>W141462466
JFHU01000257
Bacillota
Paenibacillus darwinianus [JFHU]
443
353
-
Ser
GCT
[ENA]
¡û
>C191044792
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
734022
734112
+
Ser
GCT
-
¡û
>C191044801
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
1148369
1148459
+
Ser
GCT
-
¡û
>C191125202
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
1814168
1814258
+
Ser
GCT
-
¡û
>C191125214
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
2356027
2356117
+
Ser
GCT
-
¡û
>W1910018476
BDQX01000281
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
181427
181517
+
Ser
GCT
[ENA]
¡û
>W1910018503
BDQX01000398
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
153
243
+
Ser
GCT
[ENA]
¡û
>W1910154659
BILX01000090
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
7426
7516
+
Ser
GCT
[ENA]
¡û
>W1910154674
BILY01000018
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
94571
94481
-
Ser
GCT
[ENA]
¡û
>W1910154816
BIMB01000041
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
15764
15675
-
Ser
GCT
[ENA]
¡û
>W1910154921
BIMD01000041
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
36550
36460
-
Ser
GCT
[ENA]
¡û
>W1910175725
BJCS01000005
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
309367
309278
-
Ser
GCT
[ENA]
¡û
>W1910175767
BJCS01000022
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
181
270
+
Ser
GCT
[ENA]
¡û
>W1910505729
FYEP01000026
Bacillota
Paenibacillus tyrfis B69 [FYEP]
78650
78561
-
Ser
GCT
[ENA]
¡û
>W1910505735
FYEP01000035
Bacillota
Paenibacillus tyrfis B69 [FYEP]
68514
68425
-
Ser
GCT
[ENA]
¡û
>W1910891805
NFEZ01000003
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
1126083
1125994
-
Ser
GCT
[ENA]
¡û
>W1910891824
NFEZ01000003
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
933849
933759
-
Ser
GCT
[ENA]
¡û
>C09108240
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
5686885
5686795
-
Ser
GCT
[Ensembl]
¡û
>W1910940488
NJAR01000004
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
437665
437755
+
Ser
GCT
[ENA]
¡û
>W1910940497
NJAR01000005
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
494
583
+
Ser
GCT
[ENA]
¡û
>W1910940505
NJAR01000006
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
785
874
+
Ser
GCT
[ENA]
¡û
>W1911779660
QXQA01000005
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
135855
135765
-
Ser
GCT
[ENA]
¡û
>W1911779681
QXQA01000007
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
446
535
+
Ser
GCT
[ENA]
¡û
>W1911779748
QXQB01000002
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
166055
165965
-
Ser
GCT
[ENA]
¡û
>W1911779767
QXQB01000004
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
345
434
+
Ser
GCT
[ENA]
¡û
>W1911810907
QZCF01000003
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
746130
746220
+
Ser
GCT
[ENA]
¡û
>W1911810928
QZCF01000009
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
226
315
+
Ser
GCT
[ENA]
¡û
>W1810608901
QGTQ01000033
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
10343
10253
-
Ser
GCT
[ENA]
¡û
>W1810608907
QGTQ01000036
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
527
616
+
Ser
GCT
[ENA]
¡û
>W1810697176
QLUW01000003
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
339
428
+
Ser
GCT
[ENA]
¡û
>W1810697188
QLUW01000003
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
538584
538674
+
Ser
GCT
[ENA]
¡û
>W1810759052
QPJD01000008
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
241209
241299
+
Ser
GCT
[ENA]
¡û
>W1810759071
QPJD01000013
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
296
385
+
Ser
GCT
[ENA]
¡û
>W1810860925
QTTN01000003
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
147286
147376
+
Ser
GCT
[ENA]
¡û
>W1810870234
QUBQ01000002
Bacillota
Paenibacillus paeoniae M4BSY-1 [QUBQ]
159170
159080
-
Ser
GCT
[ENA]
¡û
>W1810870262
QUBQ01000008
Bacillota
Paenibacillus paeoniae M4BSY-1 [QUBQ]
277
366
+
Ser
GCT
[ENA]
¡û
>W1511499680
JXAK01000035
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
168
258
+
Ser
GCT
[ENA]
¡û
>W1511499707
JXAK01000137
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
1919
1829
-
Ser
GCT
[ENA]
¡û
>W1511541274
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
2582856
2582767
-
Ser
GCT
[ENA]
¡û
>W1511541295
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
2403654
2403564
-
Ser
GCT
[ENA]
¡û
>W1511698203
LGHP01000001
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
661516
661606
+
Ser
GCT
[ENA]
¡û
>W1511698212
LGHP01000001
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
1047517
1047606
+
Ser
GCT
[ENA]
¡û
>W11158478
AFDH01000100
Bacillota
Paenibacillus sp. HGF7 [AFDH]
8080
7990
-
Ser
GCT
[ENA]
¡û
>W11158489
AFDH01000139
Bacillota
Paenibacillus sp. HGF7 [AFDH]
22
112
+
Ser
GCT
[ENA]
¡û
>W11163511
AFHW01000031
Bacillota
Paenibacillus elgii B69 [AFHW]
55091
55180
+
Ser
GCT
[ENA]
¡û
>W11178708
AGFE01000013
Bacillota
Thermobacillus composti KWC4 [AGFE]
62086
62176
+
Ser
GCT
[ENA]
¡û
>C161058246
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4086150
4086061
-
Ser
GCT
[Ensembl]
¡û
>C161058271
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
3794301
3794212
-
Ser
GCT
[Ensembl]
¡û
>W1610048273
BBEA01000021
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
32949
33038
+
Ser
GCT
[ENA]
¡û
>W1610048350
BBEB01000025
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
32945
33034
+
Ser
GCT
[ENA]
¡û
>W1610048410
BBEC01000016
Bacillota
Paenibacillus sp. YK5 [BBEC]
4084
4173
+
Ser
GCT
[ENA]
¡û
>W1610048432
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
22
111
+
Ser
GCT
[ENA]
¡û
>C131002441
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
1023144
1023234
+
Ser
GCT
[Ensembl]
¡û
>W1610543192
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
48040
48129
+
Ser
GCT
[ENA]
¡û
>W1610543196
JTHN01000117
Bacillota
Paenibacillus sp. A3 [JTHN]
102
191
+
Ser
GCT
[ENA]
¡û
>W1610742042
LMRV01000064
Bacillota
Paenibacillus sp. Soil522 [LMRV]
27593
27504
-
Ser
GCT
[ENA]
¡û
>W1610742071
LMRV01000088
Bacillota
Paenibacillus sp. Soil522 [LMRV]
154281
154191
-
Ser
GCT
[ENA]
¡û
>W1610858579
LQRA01000044
Bacillota
Paenibacillus elgii [LQRA]
187
276
+
Ser
GCT
[ENA]
¡û
>W1610858653
LQRA01000121
Bacillota
Paenibacillus elgii [LQRA]
54241
54152
-
Ser
GCT
[ENA]
¡û
>W1611017246
LYPA01000047
Bacillota
Paenibacillus oryzae [LYPA]
243
332
+
Ser
GCT
[ENA]
¡û
>W1611017281
LYPA01000065
Bacillota
Paenibacillus oryzae [LYPA]
295415
295505
+
Ser
GCT
[ENA]
¡û
>W1710044783
BBEA01000021
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
32949
33038
+
Ser
GCT
[ENA]
¡û
>W1710044860
BBEB01000025
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
32945
33034
+
Ser
GCT
[ENA]
¡û
>W1710044920
BBEC01000016
Bacillota
Paenibacillus sp. YK5 [BBEC]
4084
4173
+
Ser
GCT
[ENA]
¡û
>W1710044942
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
22
111
+
Ser
GCT
[ENA]
¡û
>W1710505526
FMTT01000029
Bacillota
Paenibacillus tianmuensis [FMTT]
66168
66079
-
Ser
GCT
[ENA]
¡û
>W1710505536
FMTT01000037
Bacillota
Paenibacillus tianmuensis [FMTT]
11323
11412
+
Ser
GCT
[ENA]
¡û
>W1710529257
FNNV01000018
Bacillota
Paenibacillus sp. CF384 [FNNV]
85937
86027
+
Ser
GCT
[ENA]
¡û
>W1710529287
FNNV01000040
Bacillota
Paenibacillus sp. CF384 [FNNV]
16918
16829
-
Ser
GCT
[ENA]
¡û
>W1710546668
FOCJ01000006
Bacillota
Paenibacillus sp. OV219 [FOCJ]
112524
112614
+
Ser
GCT
[ENA]
¡û
>W1710559590
FOMT01000002
Bacillota
Paenibacillus catalpae [FOMT]
760531
760621
+
Ser
GCT
[ENA]
¡û
>W1710565348
FORE01000007
Bacillota
Paenibacillus sp. UNC496MF [FORE]
204736
204826
+
Ser
GCT
[ENA]
¡û
>W1710565411
FORE01000033
Bacillota
Paenibacillus sp. UNC496MF [FORE]
5956
5867
-
Ser
GCT
[ENA]
¡û
>W1710597304
FTND01000001
Bacillota
Paenibacillus sp. RU4T [FTND]
160662
160752
+
Ser
GCT
[ENA]
¡û
>W1710597359
FTND01000013
Bacillota
Paenibacillus sp. RU4T [FTND]
475
564
+
Ser
GCT
[ENA]
¡û
>W1710646323
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
48040
48129
+
Ser
GCT
[ENA]
¡û
>W1710646327
JTHN01000117
Bacillota
Paenibacillus sp. A3 [JTHN]
102
191
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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