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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174513 (26 seq.)
>W1710796706
LJSI01000035
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
130692
130768
+
Met
CAT
[ENA]
¡û
>W131229283
AUGR01000015
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
65479
65403
-
Met
CAT
[ENA]
¡û
>W1711666827
MRCI01000002
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
106654
106578
-
Met
CAT
[ENA]
¡û
>W1711666829
MRCI01000002
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
106462
106386
-
Met
CAT
[ENA]
¡û
>W1711666870
MRCJ01000007
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
105468
105392
-
Met
CAT
[ENA]
¡û
>WENV180042495
LQAF01000431
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
5550
5626
+
Met
CAT
[ENA]
¡û
>WENV170015519
AZIH01002610
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
945
869
-
Met
CAT
[ENA]
¡û
>WENV170016424
AZIK01004338
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
394
318
-
Met
CAT
[ENA]
¡û
>W2011670890
SPLL01000007
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
49179
49103
-
Met
CAT
[ENA]
¡û
>W2011670892
SPLL01000007
Gammaproteobacteria
Neptunomonas sp. XY-337 [SPLL]
48989
48913
-
Met
CAT
[ENA]
¡û
>W2011963800
VAWC01000005
Gammaproteobacteria
Neptunomonas concharum JCM 17730 [VAWC]
213715
213791
+
Met
CAT
[ENA]
¡û
>W2012230762
WBOL01000006
Gammaproteobacteria
Nitrincola schmidtii NCAIM B.02626 [WBOL]
130085
130161
+
Met
CAT
[ENA]
¡û
>W2012230764
WBOL01000006
Gammaproteobacteria
Nitrincola schmidtii NCAIM B.02626 [WBOL]
130263
130339
+
Met
CAT
[ENA]
¡û
>W2012230789
WBOM01000001
Gammaproteobacteria
Nitrincola alkalilacustris NCAIM B.02612 [WBOM]
438052
437976
-
Met
CAT
[ENA]
¡û
>W2012230791
WBOM01000001
Gammaproteobacteria
Nitrincola alkalilacustris NCAIM B.02612 [WBOM]
437823
437747
-
Met
CAT
[ENA]
¡û
>W2110602348
JAHHDZ010000002
Gammaproteobacteria
Neptunomonas phycophila 3B05 [JAHHDZ]
12590
12514
-
Met
CAT
[ENA]
¡û
>C211000164
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
3552576
3552652
+
Met
CAT
-
¡û
>C231131069
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
4410444
4410368
-
Met
CAT
-
¡û
>C231131071
CP073347
Gammaproteobacteria
Marinobacterium rhizophilum D13-1 [CP073347]
4410185
4410109
-
Met
CAT
-
¡û
>W2110747041
LJYU01000001
Gammaproteobacteria
Neptunomonas qingdaonensis P10-2-4 [LJYU]
84240
84316
+
Met
CAT
[ENA]
¡û
>C241083075
CP043869
Gammaproteobacteria
Neptunomonas concharum JCM17730 [CP043869]
3065076
3065152
+
Met
CAT
-
¡û
>C241083077
CP043869
Gammaproteobacteria
Neptunomonas concharum JCM17730 [CP043869]
3065260
3065336
+
Met
CAT
-
¡û
>C241087501
CP044222
Gammaproteobacteria
Nitrincola iocasae KXZD1103 [CP044222]
3375213
3375289
+
Met
CAT
-
¡û
>W1610660663
LJSI01000035
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
130692
130768
+
Met
CAT
[ENA]
¡û
>W1710562220
FOOU01000011
Gammaproteobacteria
Neptunomonas qingdaonensis [FOOU]
73326
73250
-
Met
CAT
[ENA]
¡û
>W1710598739
FTOE01000008
Gammaproteobacteria
Neptunomonas antarctica [FTOE]
51224
51148
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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