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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174615 (38 seq.)
>W131237513
AUOQ01000182
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-A17 [AUOQ]
11778
11863
+
Tyr
GTA
[ENA]
¡û
>WENV180020501
FTCZ01004960
[FTCZ] metagenome; soil
966
1051
+
Tyr
GTA
[ENA]
¡û
>WENV180039065
LLBY010023269
[LLBY] soil metagenome; soil from tomato rhizosphere
138
223
+
Tyr
GTA
[ENA]
¡û
>WENV180041323
LLBZ010093982
[LLBZ] soil metagenome; soil from tomato rhizosphere
2179
2094
-
Tyr
GTA
[ENA]
¡û
>WENV180690470
OCZS010007667
[OCZS] soil metagenome; soil
188
273
+
Tyr
GTA
[ENA]
¡û
>WENV180690919
OCZS010036648
[OCZS] soil metagenome; soil
1500
1415
-
Tyr
GTA
[ENA]
¡û
>WENV181162482
OEIN01186219
[OEIN] soil metagenome; soil
166
81
-
Tyr
GTA
[ENA]
¡û
>WENV181163393
OEIQ01012470
[OEIQ] soil metagenome; soil
18
103
+
Tyr
GTA
[ENA]
¡û
>WENV181165242
OEIR01681945
[OEIR] soil metagenome; soil
78
163
+
Tyr
GTA
[ENA]
¡û
>WENV181184401
OEKC01000029
[OEKC] metagenome; 1998
1164
1079
-
Tyr
GTA
[ENA]
¡û
>WENV181184600
OEKM01000319
[OEKM] metagenome; 1998
198
113
-
Tyr
GTA
[ENA]
¡û
>WENV181221888
OFCZ01001656
[OFCZ] metagenome; soil
1200
1115
-
Tyr
GTA
[ENA]
¡û
>WENV183748499
PPFU01045867
[PPFU] hypolithon metagenome; Antarctic Hypolithon
286
371
+
Tyr
GTA
[ENA]
¡û
>WENV170013858
AVBS01002519
[AVBS] soil metagenome; soil and ice from psychrophilic sampling site; human interference was very low; sample
119
204
+
Tyr
GTA
[ENA]
¡û
>WENV170013902
AVBT01000025
[AVBT] aquatic metagenome; brackish lake water
119
204
+
Tyr
GTA
[ENA]
¡û
>WENV170575402
FLYN01072084
[FLYN] hot springs metagenome; Sediment
248
163
-
Tyr
GTA
[ENA]
¡û
>WENV170988968
MWVY01042644
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
310
225
-
Tyr
GTA
[ENA]
¡û
>WENV170990863
MWWA01062217
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
224
309
+
Tyr
GTA
[ENA]
¡û
>WENV170991865
MWWA01355946
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
384
299
-
Tyr
GTA
[ENA]
¡û
>W141564486
JIAU01000007
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
54070
53985
-
Tyr
GTA
[ENA]
¡û
>W141779109
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
1508922
1508837
-
Tyr
GTA
[ENA]
¡û
>W1911783355
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
809509
809594
+
Tyr
GTA
[ENA]
¡û
>W1810579385
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1691111
1691196
+
Tyr
GTA
[ENA]
¡û
>W1810725246
QOCK01000003
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
154276
154361
+
Tyr
GTA
[ENA]
¡û
>W2010567417
JAATJC010000001
Alphaproteobacteria
Sphingomonas kaistensis DSM 16846 [JAATJC]
982807
982892
+
Tyr
GTA
[ENA]
¡û
>W2011333041
QXTF01000001
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
809509
809594
+
Tyr
GTA
[ENA]
¡û
>W2011493742
RWJF01000001
Alphaproteobacteria
Sphingomonas sp. HMF7854 [RWJF]
937470
937385
-
Tyr
GTA
[ENA]
¡û
>W2012354022
WJSQ01000200
Alphaproteobacteria
Sphingomonas sp. YJ09 [WJSQ]
1485
1400
-
Tyr
GTA
[ENA]
¡û
>W2110493827
JAFFJU010000002
Alphaproteobacteria
Sphingomonas sp. SYSU D00720 [JAFFJU]
821019
821104
+
Tyr
GTA
[ENA]
¡û
>W2110493923
JAFFJW010000002
Alphaproteobacteria
Sphingomonas sp. SYSU D00722 [JAFFJW]
237728
237643
-
Tyr
GTA
[ENA]
¡û
>C211136858
CP060697
Alphaproteobacteria
Sphingomonas sp. sand1-3 [CP060697]
1254519
1254434
-
Tyr
GTA
-
¡û
>C211137729
CP060718
Alphaproteobacteria
Sphingomonas lutea KCTC 23642 [CP060718]
762287
762202
-
Tyr
GTA
-
¡û
>C211138705
CP060780
Alphaproteobacteria
Sphingomonas daechungensis KACC 18115 [CP060780]
665664
665749
+
Tyr
GTA
-
¡û
>C231381039
CP097253
Alphaproteobacteria
Sphingomonas glaciei S8-45 [CP097253]
2404252
2404337
+
Tyr
GTA
-
¡û
>C231385306
CP097462
Alphaproteobacteria
Sphingomonas sp. KRR8 [CP097462]
1583776
1583861
+
Tyr
GTA
-
¡û
>C241096705
CP045434
Alphaproteobacteria
Sphingomonas ginsengisoli An et al. 2013 KACC 16858 [CP045434]
2748268
2748183
-
Tyr
GTA
-
¡û
>C241138341
CP049871
Alphaproteobacteria
Sphingomonas sinipercae HDW15C [CP049871]
2002178
2002263
+
Tyr
GTA
-
¡û
>W2310025412
BSOO01000019
Alphaproteobacteria
Sphingomonas astaxanthinifaciens NBRC 102146 [BSOO]
51479
51394
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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