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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174626 (56 seq.)
>W1710861002
LMDI01000012
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
380308
380393
+
Tyr
GTA
[ENA]
¡û
>W1710861584
LMDS01000007
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1648
1563
-
Tyr
GTA
[ENA]
¡û
>W1710867059
LMHZ01000001
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
1848
1763
-
Tyr
GTA
[ENA]
¡û
>W1711082071
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
2426093
2426178
+
Tyr
GTA
[ENA]
¡û
>C010369
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
3138409
3138324
-
Tyr
GTA
[Ensembl]
¡û
>C011133
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
3803948
3803863
-
Tyr
GTA
[Ensembl]
¡û
>WENV180017540
FSXF01000451
[FSXF] metagenome; soil
622
537
-
Tyr
GTA
[ENA]
¡û
>WENV180018310
FSYV01000510
[FSYV] metagenome; soil
33210
33295
+
Tyr
GTA
[ENA]
¡û
>WENV180032875
FTKD01002429
[FTKD] metagenome; soil
24223
24138
-
Tyr
GTA
[ENA]
¡û
>WENV180035715
FTLB01001011
[FTLB] metagenome; soil
87
2
-
Tyr
GTA
[ENA]
¡û
>WENV180262975
OBEQ011432365
[OBEQ] groundwater metagenome; groundwater
498
583
+
Tyr
GTA
[ENA]
¡û
>WENV180298369
OBJA01301165
[OBJA] soil metagenome; sediment, water from around vicinity
232
317
+
Tyr
GTA
[ENA]
¡û
>WENV181221661
OFCW01000407
[OFCW] microbial mat metagenome; Microbial Mat
8287
8372
+
Tyr
GTA
[ENA]
¡û
>WENV181221861
OFCZ01000261
[OFCZ] metagenome; soil
2824
2739
-
Tyr
GTA
[ENA]
¡û
>WENV183697809
OUNK010144574
[OUNK] metagenome; soil
581
496
-
Tyr
GTA
[ENA]
¡û
>WENV183697876
OUNK010228191
[OUNK] metagenome; soil
117
202
+
Tyr
GTA
[ENA]
¡û
>WENV183733371
PJTY01001400
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7778
7863
+
Tyr
GTA
[ENA]
¡û
>WENV183739003
PJUE01000861
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4832
4917
+
Tyr
GTA
[ENA]
¡û
>WENV183744284
PJUK01004678
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1148
1233
+
Tyr
GTA
[ENA]
¡û
>WENV170558449
CXWL01071333
[CXWL] groundwater metagenome; biofilm material
4376
4461
+
Tyr
GTA
[ENA]
¡û
>WENV170573132
FLYJ01000250
[FLYJ] hot springs metagenome; Sediment
162
77
-
Tyr
GTA
[ENA]
¡û
>C191138954
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
2790
2705
-
Tyr
GTA
-
¡û
>W1910548747
FZOT01000001
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
481
396
-
Tyr
GTA
[ENA]
¡û
>W1910700068
MESE01000010
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
565
480
-
Tyr
GTA
[ENA]
¡û
>W1911647594
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
507
422
-
Tyr
GTA
[ENA]
¡û
>W1911802746
QYUN01000002
Betaproteobacteria
Herbaspirillum sp. K2R10-39 [QYUN]
3473976
3473891
-
Tyr
GTA
[ENA]
¡û
>W1911802789
QYUO01000001
Betaproteobacteria
Herbaspirillum sp. K1R23-30 [QYUO]
3260153
3260068
-
Tyr
GTA
[ENA]
¡û
>W1911802908
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
2800808
2800723
-
Tyr
GTA
[ENA]
¡û
>W2010430508
FZOT01000001
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
481
396
-
Tyr
GTA
[ENA]
¡û
>W2010488547
JAAIVB010000068
Betaproteobacteria
Noviherbaspirillum sp. 17J57-3 [JAAIVB]
499
414
-
Tyr
GTA
[ENA]
¡û
>W2010833494
MESE01000010
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
565
480
-
Tyr
GTA
[ENA]
¡û
>W2011235578
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
507
422
-
Tyr
GTA
[ENA]
¡û
>W2011344377
QYUN01000002
Betaproteobacteria
Herbaspirillum sp. K2R10-39 [QYUN]
3473976
3473891
-
Tyr
GTA
[ENA]
¡û
>W2011344420
QYUO01000001
Betaproteobacteria
Herbaspirillum sp. K1R23-30 [QYUO]
3260153
3260068
-
Tyr
GTA
[ENA]
¡û
>W2011344539
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
2800808
2800723
-
Tyr
GTA
[ENA]
¡û
>W2011471136
RPNZ01000001
Betaproteobacteria
Herbaspirillum sp. HC18 [RPNZ]
1188820
1188905
+
Tyr
GTA
[ENA]
¡û
>W2011694772
STGI01000006
Betaproteobacteria
Herbaspirillum sp. ST 5-3 [STGI]
142049
141964
-
Tyr
GTA
[ENA]
¡û
>W2012012869
VFAH01000001
Betaproteobacteria
Noviherbaspirillum sp. 122213-3 [VFAH]
601862
601947
+
Tyr
GTA
[ENA]
¡û
>W2012144270
VTTH01000007
Betaproteobacteria
Oxalobacteraceae bacterium CHu64-6-4 [VTTH]
20960
20875
-
Tyr
GTA
[ENA]
¡û
>W2110018754
BMCG01000004
Betaproteobacteria
Oxalicibacterium flavum CCM 7086 [BMCG]
289435
289520
+
Tyr
GTA
[ENA]
¡û
>W2110020104
BMDI01000004
Betaproteobacteria
Oxalicibacterium faecigallinarum CCM 2767 [BMDI]
92793
92878
+
Tyr
GTA
[ENA]
¡û
>W2110072029
BPMK01000007
Betaproteobacteria
Noviherbaspirillum sp. NCCP-691 [BPMK]
251052
251137
+
Tyr
GTA
[ENA]
¡û
>W2110097050
CAJEVT010000001
Betaproteobacteria
Herminiimonas sp. Marseille-P9896 [CAJEVT]
513273
513358
+
Tyr
GTA
[ENA]
¡û
>ENV09004068
ADIG01003442
Groundwater metagenome 4000601.lucy.pga.C1
181
266
+
Tyr
GTA
[ENA]
¡û
>W2110289256
JACYOX010000038
Betaproteobacteria
Noviherbaspirillum soli SUEMI10 [JACYOX]
49800
49885
+
Tyr
GTA
[ENA]
¡û
>W2110292639
JACYXF010000005
Betaproteobacteria
Noviherbaspirillum malthae CC-AFH3 [JACYXF]
21175
21090
-
Tyr
GTA
[ENA]
¡û
>W2110360984
JADOEL010000008
Betaproteobacteria
Herminiimonas contaminans Marseille-Q4544 [JADOEL]
42937
43022
+
Tyr
GTA
[ENA]
¡û
>W2110437941
JAEPBG010000001
Betaproteobacteria
Noviherbaspirillum pedocola DKR-6 [JAEPBG]
1052542
1052457
-
Tyr
GTA
[ENA]
¡û
>W2110638103
JAHQRJ010000001
Betaproteobacteria
Noviherbaspirillum sp. L7-7A [JAHQRJ]
3683515
3683600
+
Tyr
GTA
[ENA]
¡û
>C241050994
CP040128
Betaproteobacteria
Noviherbaspirillum sp. UKPF54 [CP040128]
4452794
4452879
+
Tyr
GTA
-
¡û
>C241312835
CP133777
Betaproteobacteria
Actimicrobium sp. CCC2.4 [CP133777]
153761
153676
-
Tyr
GTA
-
¡û
>W1511480630
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
730453
730538
+
Tyr
GTA
[ENA]
¡û
>W11143211
AEPR01000233
Betaproteobacteria
Oxalobacteraceae bacterium IMCC9480 [AEPR]
9491
9576
+
Tyr
GTA
[ENA]
¡û
>W1610723348
LMDI01000012
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
380308
380393
+
Tyr
GTA
[ENA]
¡û
>W1610723930
LMDS01000007
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1648
1563
-
Tyr
GTA
[ENA]
¡û
>W1610729405
LMHZ01000001
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
1848
1763
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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