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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174771 (13 seq.)
>W1711582557
MNVT01000054
Unclassified
Candidatus Omnitrophica bacterium CG1_02_49_10 [MNVT]
1704
1780
+
Arg
TCG
[ENA]
¡û
>W1711583463
MNXF01000028
Unclassified
Candidatus Omnitrophica bacterium CG1_02_43_210 [MNXF]
957
881
-
Arg
TCG
[ENA]
¡û
>WENV180373017
OBOI01179011
[OBOI] sediment metagenome; sediment
121
197
+
Arg
TCG
[ENA]
¡û
>WENV183670475
ORJL010949655
[ORJL] groundwater metagenome; groundwater
114838
114914
+
Arg
TCG
[ENA]
¡û
>WENV183672723
ORJL011203224
[ORJL] groundwater metagenome; groundwater
247514
247590
+
Arg
TCG
[ENA]
¡û
>W1910731741
MHFG01000015
Unclassified
Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_46_20 [MHFG]
26198
26122
-
Arg
TCG
[ENA]
¡û
>W1910731983
MHFN01000078
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_24 [MHFN]
38860
38784
-
Arg
TCG
[ENA]
¡û
>W1910732067
MHFQ01000055
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_02_FULL_45_16 [MHFQ]
75929
76005
+
Arg
TCG
[ENA]
¡û
>W1910732153
MHFS01000069
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_12_FULL_45_13 [MHFS]
21236
21160
-
Arg
TCG
[ENA]
¡û
>W2010865171
MHFG01000015
Unclassified
Omnitrophica bacterium RIFCSPHIGHO2_02_FULL_46_20 [MHFG]
26198
26122
-
Arg
TCG
[ENA]
¡û
>W2010865413
MHFN01000078
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_01_FULL_45_24 [MHFN]
38860
38784
-
Arg
TCG
[ENA]
¡û
>W2010865497
MHFQ01000055
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_02_FULL_45_16 [MHFQ]
75929
76005
+
Arg
TCG
[ENA]
¡û
>W2010865583
MHFS01000069
Unclassified
Omnitrophica bacterium RIFCSPLOWO2_12_FULL_45_13 [MHFS]
21236
21160
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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