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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174771 (26 seq.)
>W1711065138
LSBN01000256
Bacillota
Halanaerobium sp. T82-1 [LSBN]
192
268
+
His
GTG
[ENA]
¡û
>W1711345184
MCNP01000081
Bacillota
Halanaerobium sp. 4-GBenrich [MCNP]
6038
6114
+
His
GTG
[ENA]
¡û
>W131250057
CAUI01000023
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
91792
91716
-
His
GTG
[ENA]
¡û
>W1711431479
MIJU01000074
Bacillota
Halanaerobium sp. MDAL1 [MIJU]
13594
13670
+
His
GTG
[ENA]
¡û
>WENV170675491
LCWZ01093036
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
133
209
+
His
GTG
[ENA]
¢þ
>C191012330
CP016379
Bacillota
Anoxybacter fermentans DY22613 [CP016379]
1841305
1841229
-
His
GTG
-
¡û
>C191094417
CP032760
Bacillota
Halocella sp. SP3-1 [CP032760]
1256104
1256180
+
His
GTG
-
¡û
>W1810503734
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
1484401
1484477
+
His
GTG
[ENA]
¡û
>W1810628433
QICM01000018
Bacillota
Halanaerobium congolense MSL28 [QICM]
37128
37204
+
His
GTG
[ENA]
¡û
>W1810694645
QLME01000008
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
81250
81326
+
His
GTG
[ENA]
¡û
>W1810759130
QPJE01000029
Bacillota
Halanaerobium sp. MA284_MarDTE_T2 [QPJE]
11059
11135
+
His
GTG
[ENA]
¡û
>W1810759562
QPJN01000005
Bacillota
Halanaerobium sp. DL-01 [QPJN]
41835
41759
-
His
GTG
[ENA]
¡û
>C11110018
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1000191
1000267
+
His
GTG
[Ensembl]
¡û
>C11110020
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1000386
1000462
+
His
GTG
[Ensembl]
¡û
>C11110560
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
688106
688182
+
His
GTG
[Ensembl]
¡û
>W1610905927
LSBN01000256
Bacillota
Halanaerobium sp. T82-1 [LSBN]
192
268
+
His
GTG
[ENA]
¡û
>W1710511576
FMYT01000019
Bacillota
Halanaerobium congolense [FMYT]
36857
36933
+
His
GTG
[ENA]
¡û
>W1710514979
FNBJ01000002
Bacillota
Halanaerobium congolense [FNBJ]
93548
93472
-
His
GTG
[ENA]
¡û
>W1710517300
FNDF01000003
Bacillota
Halanaerobium congolense [FNDF]
45489
45565
+
His
GTG
[ENA]
¡û
>W1710518876
FNEH01000020
Bacillota
Halanaerobium congolense [FNEH]
11504
11428
-
His
GTG
[ENA]
¡û
>W1710521028
FNGB01000004
Bacillota
Halanaerobium congolense [FNGB]
36855
36931
+
His
GTG
[ENA]
¡û
>W1710522719
FNHK01000004
Bacillota
Halanaerobium congolense [FNHK]
36859
36935
+
His
GTG
[ENA]
¡û
>W1710553031
FOHG01000002
Bacillota
Halanaerobium congolense [FOHG]
91736
91812
+
His
GTG
[ENA]
¡û
>W1710553318
FOHM01000020
Bacillota
Halanaerobium congolense [FOHM]
36622
36698
+
His
GTG
[ENA]
¡û
>W1710572806
FOWY01000002
Bacillota
Halanaerobium congolense [FOWY]
93571
93495
-
His
GTG
[ENA]
¡û
>W1710592927
FRCV01000016
Bacillota
Halanaerobium congolense [FRCV]
36887
36963
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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