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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174795 (28 seq.)
>W1711584901
MNZA01000179
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_44_21 [MNZA]
1134
1207
+
Arg
CCG
[ENA]
¡û
>W141038654
ALWB01000008
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
23667
23742
+
Arg
CCG
[ENA]
¡û
>WENV181843373
OGVU01011338
[OGVU] freshwater metagenome; freshwater
704
629
-
Arg
CCG
[ENA]
¡û
>WENV181848725
OGVZ01020475
[OGVZ] freshwater metagenome; freshwater
362
437
+
Arg
CCG
[ENA]
¡û
>WENV170122079
CENN01045032
[CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
265
190
-
Arg
CCG
[ENA]
¡û
>WENV170163541
CEOM01145705
[CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
865
790
-
Arg
CCG
[ENA]
¡û
>WENV170767436
LXNH01001553
[LXNH] seawater metagenome; marine seawater
6774
6699
-
Arg
CCG
[ENA]
¡û
>C191000288
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
808954
809029
+
Arg
CCG
-
¡û
>W1910872427
NDHW01000104
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
31725
31650
-
Arg
CCG
[ENA]
¡û
>W1810053461
PDDM01000026
Cyanobacteriota
Pseudanabaena sp. BC1403 [PDDM]
5468
5543
+
Arg
CCG
[ENA]
¡û
>W2010570312
JAATWA010000001
Cyanobacteriota
Pseudanabaena biceps O153 [JAATWA]
301612
301687
+
Arg
CCG
[ENA]
¡û
>W2010941130
NDHW01000104
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
31725
31650
-
Arg
CCG
[ENA]
¡û
>W2011555665
SELU01000060
Cyanobacteriota
Pseudanabaena sp. UWO310 [SELU]
22853
22928
+
Arg
CCG
[ENA]
¡û
>W2110011519
BBJB01000086
Cyanobacteriota
Pseudanabaena sp. lw0831 [BBJB]
13359
13434
+
Arg
CCG
[ENA]
¡û
>W2110229087
JACJPY010000006
Cyanobacteriota
Pseudanabaena sp. FACHB-1277 [JACJPY]
83219
83144
-
Arg
CCG
[ENA]
¡û
>W2110229174
JACJQA010000033
Cyanobacteriota
Pseudanabaena sp. FACHB-1998 [JACJQA]
229685
229610
-
Arg
CCG
[ENA]
¡û
>W2110229195
JACJQB010000004
Cyanobacteriota
Pseudanabaena sp. FACHB-723 [JACJQB]
929
856
-
Arg
CCG
[ENA]
¡û
>W2110230352
JACJQY010000009
Cyanobacteriota
Pseudanabaena sp. FACHB-1050 [JACJQY]
145106
145031
-
Arg
CCG
[ENA]
¡û
>C211072279
CP047931
Cyanobacteriota
Synechococcus sp. A15-28 [CP047931]
1838857
1838782
-
Arg
CCG
-
¡û
>C211072525
CP047939
Cyanobacteriota
Synechococcus sp. BMK-MC-1 [CP047939]
519934
520007
+
Arg
CCG
-
¡û
>C211073253
CP047956
Cyanobacteriota
Synechococcus sp. A18-40 [CP047956]
1913125
1913050
-
Arg
CCG
-
¡û
>C211073430
CP047960
Cyanobacteriota
Synechococcus sp. A15-24 [CP047960]
1832548
1832473
-
Arg
CCG
-
¡û
>C231436831
CP101416
Cyanobacteriota
Pseudanabaena sp. Chao 1811 [CP101416]
2610945
2611020
+
Arg
CCG
-
¡û
>C241192165
CP097329
Cyanobacteriota
Pseudanabaena mucicola str. Chao 1806 [CP097329]
3649098
3649023
-
Arg
CCG
-
¡û
>C241220808
CP112874
Cyanobacteriota
Pseudanabaena galeata CCNP1313 [CP112874]
3591927
3591852
-
Arg
CCG
-
¡û
>W1610634160
LIRE01000750
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
3767
3692
-
Arg
CCG
[ENA]
¡û
>W1710698107
LAZT01000037
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
870
943
+
Arg
CCG
[ENA]
¡û
>W1710698119
LAZT01000051
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
46925
46998
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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