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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174832 (119 seq.)
>W1711183647
LWLE01000007
Actinomycetota
Streptomyces sp. TSRI0281 [LWLE]
77390
77316
-
Thr
TGT
[ENA]
¡û
>W1711314028
MAUD01000440
Actinomycetota
Streptomyces lushanensis [MAUD]
3028
3104
+
Thr
TGT
[ENA]
¡û
>W1711751014
MUNI01000529
Actinomycetota
Streptomyces reticuliscabiei [MUNI]
3444
3368
-
Thr
TGT
[ENA]
¡û
>W1711770779
MVFC01000011
Actinomycetota
Streptomyces tsukubensis [MVFC]
82152
82078
-
Thr
TGT
[ENA]
¡û
>W131241208
BARF01000092
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
115322
115246
-
Thr
TGT
[ENA]
¡û
>W131241261
BARG01000061
Actinomycetota
Streptomyces hokutonensis R1-NS-10 [BARG]
7574
7650
+
Thr
TGT
[ENA]
¡û
>C171071901
CP018047
Actinomycetota
Streptomyces niveus SCSIO 3406 [CP018047]
4371048
4371122
+
Thr
TGT
-
¡û
>W131000177
AEJB01000339
Actinomycetota
Streptomyces turgidiscabies Car8 [AEJB]
7087
7011
-
Thr
TGT
[ENA]
¡û
>WENV180016663
FSVS01000429
[FSVS] metagenome; soil
5082
5006
-
Thr
TGT
[ENA]
¡û
>WENV180028922
FTJH01459532
[FTJH] metagenome; soil
682
606
-
Thr
TGT
[ENA]
¡û
>W141142668
AWQW01000161
Actinomycetota
Streptomyces niveus NCIMB 11891 [AWQW]
2881
2957
+
Thr
TGT
[ENA]
¡û
>WENV181843736
OGVU01056272
[OGVU] freshwater metagenome; freshwater
217
143
-
Thr
TGT
[ENA]
¡û
>C181196649
CP031194
Actinomycetota
Streptomyces paludis GSSD-12 [CP031194]
4240053
4240127
+
Thr
TGT
-
¡û
>C181228756
LT962942
Actinomycetota
Streptomyces chartreusis NRRL 3882 [LT962942]
4935978
4936052
+
Thr
TGT
-
¡û
>C181229252
LT963352
Actinomycetota
Streptomyces chartreusis NRRL 3882 [LT963352]
4935978
4936052
+
Thr
TGT
-
¡û
>C191024588
CP023407
Actinomycetota
Streptomyces fungicidicus TXX3120 [CP023407]
3503286
3503211
-
Thr
TGT
-
¡û
>W141756405
JNXE01000009
Actinomycetota
Streptomyces sp. NRRL F-525 [JNXE]
120288
120214
-
Thr
TGT
[ENA]
¡û
>W141763401
JOCA01000015
Actinomycetota
Streptomyces sp. NRRL WC-3626 [JOCA]
66034
65960
-
Thr
TGT
[ENA]
¡û
>W141767002
JOEI01000017
Actinomycetota
Streptomyces scopuliridis RB72 [JOEI]
74944
74868
-
Thr
TGT
[ENA]
¡û
>W141769895
JOGC01001934
Actinomycetota
Streptomyces sp. NRRL S-525 [JOGC]
2398
2472
+
Thr
TGT
[ENA]
¡û
>W141774295
JOIZ01000014
Actinomycetota
Streptomyces sp. NRRL S-37 [JOIZ]
98463
98537
+
Thr
TGT
[ENA]
¡û
>W1910006366
AZSP01000002
Actinomycetota
Streptomyces scopuliridis RB72 [AZSP]
23915
23990
+
Thr
TGT
[ENA]
¡û
>W1911138176
NOWW01000007
Actinomycetota
Streptomyces sp. TSRI0384-2 [NOWW]
268935
268861
-
Thr
TGT
[ENA]
¡û
>W1911582851
PHRF01000020
Actinomycetota
Streptomyces sp. L-9-10 [PHRF]
125602
125527
-
Thr
TGT
[ENA]
¡û
>W1810568787
QEES01000002
Actinomycetota
Cellulomonas sp. WB94 [QEES]
2020224
2020298
+
Thr
TGT
[ENA]
¡û
>W2010074548
AZSP01000002
Actinomycetota
Streptomyces scopuliridis RB72 [AZSP]
23915
23990
+
Thr
TGT
[ENA]
¡û
>W2010139473
BLLG01000007
Actinomycetota
Streptomyces sp. CWH03 [BLLG]
80029
80105
+
Thr
TGT
[ENA]
¡û
>W2010139636
BLLM01000001
Actinomycetota
Streptomyces rutgersensis NBRC 12819 [BLLM]
927381
927307
-
Thr
TGT
[ENA]
¡û
>W2010139685
BLLN01000002
Actinomycetota
Streptomyces diastaticus subsp. diastaticus NBRC 13412 [BLLN]
305144
305070
-
Thr
TGT
[ENA]
¡û
>W2010139762
BLLO01000017
Actinomycetota
Streptomyces gougerotii NBRC 13043 [BLLO]
971768
971842
+
Thr
TGT
[ENA]
¡û
>W2010465425
JAAGLN010000036
Actinomycetota
Streptomyces sp. SID10853 [JAAGLN]
40926
40852
-
Thr
TGT
[ENA]
¡û
>W2010465574
JAAGLP010005331
Actinomycetota
Streptomyces sp. SID11233 [JAAGLP]
2970
3044
+
Thr
TGT
[ENA]
¡û
>W2010467647
JAAGMV010009015
Actinomycetota
Streptomyces sp. SID7982 [JAAGMV]
2903
2977
+
Thr
TGT
[ENA]
¡û
>W2010468123
JAAGND010003605
Actinomycetota
Streptomyces sp. SID8455 [JAAGND]
2887
2961
+
Thr
TGT
[ENA]
¡û
>W2010681777
JACEHE010000008
Actinomycetota
Streptomyces sp. PSKA28 [JACEHE]
207536
207460
-
Thr
TGT
[ENA]
¡û
>W2010698662
JACHEM010000004
Actinomycetota
Streptomyces candidus DSM 40141 [JACHEM]
401072
400997
-
Thr
TGT
[ENA]
¡û
>W2011014418
NOWW01000007
Actinomycetota
Streptomyces sp. TSRI0384-2 [NOWW]
268935
268861
-
Thr
TGT
[ENA]
¡û
>W2011193614
PHRF01000020
Actinomycetota
Streptomyces sp. L-9-10 [PHRF]
125602
125527
-
Thr
TGT
[ENA]
¡û
>W2011442317
RJUU01000001
Actinomycetota
Streptomyces sp. 840.1 [RJUU]
1794895
1794819
-
Thr
TGT
[ENA]
¡û
>W2011461761
RPGV01000050
Actinomycetota
Streptomyces sp. ADI95-17 [RPGV]
15371
15295
-
Thr
TGT
[ENA]
¡û
>W2011462034
RPHA01000089
Actinomycetota
Streptomyces sp. ADI98-12 [RPHA]
51311
51385
+
Thr
TGT
[ENA]
¡û
>W2011844553
UHID01000001
Actinomycetota
Streptomyces griseus NCTC7807 [UHID]
304013
304087
+
Thr
TGT
[ENA]
¡û
>W2011976124
VCLA01000194
Actinomycetota
Streptomyces jumonjinensis NRRL 5741 [VCLA]
90707
90633
-
Thr
TGT
[ENA]
¡û
>W2011981317
VDEQ01000367
Actinomycetota
Streptomyces katsurahamanus T-272 [VDEQ]
21711
21785
+
Thr
TGT
[ENA]
¡û
>W2012020006
VFOE01000001
Actinomycetota
Streptomyces sp. SLBN-134 [VFOE]
4227495
4227570
+
Thr
TGT
[ENA]
¡û
>W2012475829
WWIQ01000010
Actinomycetota
Streptomyces sp. SID5464 [WWIQ]
404185
404111
-
Thr
TGT
[ENA]
¡û
>W2012476708
WWJE01000037
Actinomycetota
Streptomyces sp. SID4936 [WWJE]
136213
136288
+
Thr
TGT
[ENA]
¡û
>W2110039320
BMSB01000016
Actinomycetota
Streptomyces diastaticus subsp. diastaticus JCM 4128 [BMSB]
20252
20178
-
Thr
TGT
[ENA]
¡û
>W2110039370
BMSC01000012
Actinomycetota
Streptomyces gougerotii JCM 4136 [BMSC]
130377
130303
-
Thr
TGT
[ENA]
¡û
>W2110042797
BMUF01000015
Actinomycetota
Streptomyces malachitofuscus JCM 4493 [BMUF]
64463
64388
-
Thr
TGT
[ENA]
¡û
>W2110052880
BNBI01000006
Actinomycetota
Streptomyces fumanus JCM 4477 [BNBI]
107562
107637
+
Thr
TGT
[ENA]
¡û
>W2110053203
BNBN01000007
Actinomycetota
Streptomyces candidus JCM 4629 [BNBN]
112594
112669
+
Thr
TGT
[ENA]
¡û
>W2110273915
JACVQE020000001
Actinomycetota
Streptomyces sp. BRB081 [JACVQE]
2952931
2952857
-
Thr
TGT
[ENA]
¡û
>W2110287809
JACYHF010000015
Actinomycetota
Streptomyces sp. DSM 110735 [JACYHF]
88135
88209
+
Thr
TGT
[ENA]
¡û
>W2110436004
JAENRY010000008
Actinomycetota
Streptomyces sp. MBT65 [JAENRY]
39566
39492
-
Thr
TGT
[ENA]
¡û
>W2110436083
JAENRZ010000076
Actinomycetota
Streptomyces sp. MBT62 [JAENRZ]
14895
14971
+
Thr
TGT
[ENA]
¡û
>W2110438735
JAEQAZ010000172
Actinomycetota
Streptomyces sp. MBT53 [JAEQAZ]
22742
22667
-
Thr
TGT
[ENA]
¡û
>W2110483650
JAFELB020000001
Actinomycetota
Streptomyces sp. AD2-3 [JAFELB]
4376854
4376779
-
Thr
TGT
[ENA]
¡û
>W2110483683
JAFELC020000001
Actinomycetota
Streptomyces sp. AD2-2 [JAFELC]
5599367
5599442
+
Thr
TGT
[ENA]
¡û
>W2110512718
JAFLRJ010000250
Actinomycetota
Streptomyces beijiangensis DSM 41794 [JAFLRJ]
15715
15640
-
Thr
TGT
[ENA]
¡û
>W2110555832
JAGIQL010000078
Actinomycetota
Streptomyces bomunensis MMS17-BM035 [JAGIQL]
22434
22358
-
Thr
TGT
[ENA]
¡û
>W2110562136
JAGMUK010000028
Actinomycetota
Streptomyces sp. AC555_RSS877 [JAGMUK]
119972
119898
-
Thr
TGT
[ENA]
¡û
>C211064957
CP045702
Actinomycetota
Streptomyces finlayi NBSH44 [CP045702]
3387157
3387083
-
Thr
TGT
-
¡û
>C211064993
CP045704
Actinomycetota
Streptomyces rutgersensis NBH77 [CP045704]
3840807
3840881
+
Thr
TGT
-
¡û
>C211358134
CP077658
Actinomycetota
Streptomyces sp. GMY02 [CP077658]
4734444
4734518
+
Thr
TGT
-
¡û
>C231222979
CP086173
Actinomycetota
Streptomyces fungicidicus ATCC 21013 [CP086173]
3503346
3503271
-
Thr
TGT
-
¡û
>C231223041
CP086174
Actinomycetota
Streptomyces fungicidicus F10 [CP086174]
3503346
3503271
-
Thr
TGT
-
¡û
>C231223103
CP086175
Actinomycetota
Streptomyces fungicidicus F9 [CP086175]
3503348
3503273
-
Thr
TGT
-
¡û
>C231223165
CP086176
Actinomycetota
Streptomyces fungicidicus F8 [CP086176]
3503774
3503699
-
Thr
TGT
-
¡û
>C231223227
CP086177
Actinomycetota
Streptomyces fungicidicus F7 [CP086177]
3503781
3503706
-
Thr
TGT
-
¡û
>C231223289
CP086178
Actinomycetota
Streptomyces fungicidicus F2 [CP086178]
3503346
3503271
-
Thr
TGT
-
¡û
>C231223351
CP086179
Actinomycetota
Streptomyces fungicidicus F1 [CP086179]
3503344
3503269
-
Thr
TGT
-
¡û
>C231502729
CP106746
Actinomycetota
Streptomyces sp. AD2-2 [CP106746]
5597201
5597276
+
Thr
TGT
-
¡û
>C231617725
CP119145
Actinomycetota
Streptomyces sp. AM 4-1-1 [CP119145]
3083675
3083600
-
Thr
TGT
-
¡û
>C241092828
CP045178
Actinomycetota
Streptomyces tsukubensis AT3 [CP045178]
3757324
3757250
-
Thr
TGT
-
¡û
>C241170544
CP054939
Actinomycetota
Streptomyces sp. NA02536 [CP054939]
3471579
3471504
-
Thr
TGT
-
¡û
>C241202471
CP107903
Actinomycetota
Streptomyces sp. NBC_00459 [CP107903]
5377880
5377954
+
Thr
TGT
-
¡û
>C241203214
CP107921
Actinomycetota
Streptomyces sp. NBC_00440 [CP107921]
3708121
3708047
-
Thr
TGT
-
¡û
>C241204496
CP107948
Actinomycetota
Streptomyces sp. NBC_00388 [CP107948]
3488900
3488826
-
Thr
TGT
-
¡û
>C241206074
CP107998
Actinomycetota
Streptomyces sp. NBC_00343 [CP107998]
5638613
5638689
+
Thr
TGT
-
¡û
>C241206181
CP107999
Actinomycetota
Streptomyces sp. NBC_00342 [CP107999]
3721721
3721645
-
Thr
TGT
-
¡û
>C241206906
CP108023
Actinomycetota
Streptomyces sp. NBC_00316 [CP108023]
4163235
4163161
-
Thr
TGT
-
¡û
>C241207260
CP108261
Actinomycetota
Streptomyces sp. NBC_00053 [CP108261]
5074510
5074586
+
Thr
TGT
-
¡û
>C241207479
CP108349
Actinomycetota
Streptomyces sp. NBC_01358 [CP108349]
4431563
4431489
-
Thr
TGT
-
¡û
>C241207705
CP108354
Actinomycetota
Streptomyces sp. NBC_01352 [CP108354]
5979101
5979178
+
Thr
TGT
-
¡û
>C241208143
CP108364
Actinomycetota
Streptomyces sp. NBC_01341 [CP108364]
3396673
3396599
-
Thr
TGT
-
¡û
>C241208539
CP108392
Actinomycetota
Streptomyces sp. NBC_01318 [CP108392]
4755614
4755540
-
Thr
TGT
-
¡û
>C241208997
CP108427
Actinomycetota
Streptomyces sp. NBC_01288 [CP108427]
5661240
5661315
+
Thr
TGT
-
¡û
>C241209621
CP108455
Actinomycetota
Streptomyces sp. NBC_01267 [CP108455]
3529270
3529196
-
Thr
TGT
-
¡û
>C241209844
CP108463
Actinomycetota
Streptomyces sp. NBC_01261 [CP108463]
6252812
6252887
+
Thr
TGT
-
¡û
>C241210475
CP108491
Actinomycetota
Streptomyces sp. NBC_01243 [CP108491]
3938062
3937986
-
Thr
TGT
-
¡û
>C241210879
CP108521
Actinomycetota
Streptomyces sp. NBC_01231 [CP108521]
4791428
4791353
-
Thr
TGT
-
¡û
>C241210938
CP108522
Actinomycetota
Streptomyces sp. NBC_01230 [CP108522]
4800743
4800669
-
Thr
TGT
-
¡û
>C241211990
CP108569
Actinomycetota
Streptomyces sp. NBC_01197 [CP108569]
4125001
4125075
+
Thr
TGT
-
¡û
>C241212915
CP109004
Actinomycetota
Streptomyces sp. NBC_00696 [CP109004]
5125804
5125729
-
Thr
TGT
-
¡û
>C241213849
CP109055
Actinomycetota
Streptomyces sp. NBC_01304 [CP109055]
6089839
6089915
+
Thr
TGT
-
¡û
>C241215561
CP109337
Actinomycetota
Streptomyces sp. NBC_00455 [CP109337]
3616100
3616026
-
Thr
TGT
-
¡û
>C241215750
CP109429
Actinomycetota
Streptomyces brevispora NBC_01496 [CP109429]
4076840
4076765
-
Thr
TGT
-
¡û
>C241216347
CP109444
Actinomycetota
Streptomyces sp. NBC_01478 [CP109444]
5457966
5457891
-
Thr
TGT
-
¡û
>C241216754
CP109467
Actinomycetota
Streptomyces sp. NBC_01465 [CP109467]
4566747
4566821
+
Thr
TGT
-
¡û
>C241216847
CP109468
Actinomycetota
Streptomyces sp. NBC_01463 [CP109468]
4155020
4154946
-
Thr
TGT
-
¡û
>C241217362
CP109483
Actinomycetota
Streptomyces niveus NBC_01447 [CP109483]
3545900
3545825
-
Thr
TGT
-
¡û
>C241217616
CP109492
Actinomycetota
Streptomyces sp. NBC_01435 [CP109492]
3610601
3610526
-
Thr
TGT
-
¡û
>C241217640
CP109495
Actinomycetota
Streptomyces niveus NBC_01432 [CP109495]
5247079
5247154
+
Thr
TGT
-
¡û
>C241218199
CP109586
Actinomycetota
Streptomyces sp. NBC_01362 [CP109586]
4402022
4401946
-
Thr
TGT
-
¡û
>C241218524
CP109599
Actinomycetota
Streptomyces sp. NBC_01429 [CP109599]
3531951
3531876
-
Thr
TGT
-
¡û
>C241242984
CP120992
Actinomycetota
Streptomyces laculatispora Mut2 [CP120992]
4042150
4042076
-
Thr
TGT
-
¡û
>C241338263
CP137549
Actinomycetota
Streptomyces sp. N50 [CP137549]
4050097
4050022
-
Thr
TGT
-
¡û
>W1511401282
JTHL01000001
Actinomycetota
Streptomyces sp. 150FB [JTHL]
5131049
5131125
+
Thr
TGT
[ENA]
¡û
>W1511696234
LGDG01000123
Actinomycetota
Streptomyces sp. MMG1533 [LGDG]
61946
61869
-
Thr
TGT
[ENA]
¡û
>W1511697333
LGDW01000080
Actinomycetota
Streptomyces sp. NRRL WC-3618 [LGDW]
12760
12686
-
Thr
TGT
[ENA]
¡û
>W11178265
AGDE01000053
Actinomycetota
Streptomyces chartreusis NRRL 12338 [AGDE]
57261
57185
-
Thr
TGT
[ENA]
¡û
>W1610061347
BCMN01000018
Actinomycetota
Streptomyces turgidiscabies [BCMN]
127511
127587
+
Thr
TGT
[ENA]
¡û
>W1610633354
LIQQ01000720
Actinomycetota
Streptomyces graminilatus [LIQQ]
3637
3563
-
Thr
TGT
[ENA]
¡û
>W1611059023
MAUD01000440
Actinomycetota
Streptomyces lushanensis [MAUD]
3028
3104
+
Thr
TGT
[ENA]
¡û
>W1710059012
BCMN01000018
Actinomycetota
Streptomyces turgidiscabies [BCMN]
127511
127587
+
Thr
TGT
[ENA]
¡û
>W1710501524
FMBW01000031
Actinomycetota
Streptomyces sp. DvalAA-43 [FMBW]
136213
136289
+
Thr
TGT
[ENA]
¡û
>W1710536755
FNTK01000001
Actinomycetota
Streptomyces sp. 3213.3 3213 [FNTK]
6116172
6116248
+
Thr
TGT
[ENA]
¡û
>W1710767786
LIQQ01000720
Actinomycetota
Streptomyces graminilatus [LIQQ]
3637
3563
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
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Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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