This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175232 (42 seq.)
>W131231062
AUID01000042
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
2678
2602
-
Met
CAT
[ENA]
¡û
>C000843
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4444946
4444870
-
Met
CAT
[Ensembl]
¡û
>w017056
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1616
1538
-
Met
CAT
[ENA]
¡û
>w017029
AAQV01000054
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
7346
7268
-
Met
CAT
[ENA]
¡û
>w010480
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
118
40
-
Met
CAT
[ENA]
¡û
>w010457
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2639
2717
+
Met
CAT
[ENA]
¡û
>w010437
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
6547
6625
+
Met
CAT
[ENA]
¡û
>w010396
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1155
1233
+
Met
CAT
[ENA]
¡û
>WENV181481250
OGFI01000976
[OGFI] metagenome; Human gut stool
14916
14992
+
Met
CAT
[ENA]
¡û
>WENV181897682
OGXT01000595
[OGXT] human gut metagenome; faeces
40258
40334
+
Met
CAT
[ENA]
¡û
>WENV181990946
OHAQ01000010
[OHAQ] human gut metagenome; faeces
15286
15210
-
Met
CAT
[ENA]
¡û
>WENV182238722
OHRZ01022448
[OHRZ] human gut metagenome; feces
160
84
-
Met
CAT
[ENA]
¡û
>WENV182344564
OIAL01049286
[OIAL] human gut metagenome; feces
495
571
+
Met
CAT
[ENA]
¡û
>C08000751
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2610968
2610895
-
Met
CAT
[Ensembl]
¡û
>C08000783
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1924141
1924068
-
Met
CAT
[Ensembl]
¡û
>WENV182683538
OJNX01001486
[OJNX] human gut metagenome; human gut
12251
12175
-
Met
CAT
[ENA]
¡û
>WENV182698968
OJON01001465
[OJON] human gut metagenome; human gut
139
215
+
Met
CAT
[ENA]
¡û
>WENV183123284
OLNW01000478
[OLNW] human gut metagenome; faeces
45352
45428
+
Met
CAT
[ENA]
¡û
>WENV183151901
OLOQ01001138
[OLOQ] human gut metagenome; faeces
24775
24851
+
Met
CAT
[ENA]
¡û
>WENV183159294
OLOU01001914
[OLOU] human gut metagenome; faeces
9433
9509
+
Met
CAT
[ENA]
¡û
>WENV183161310
OLOV01004384
[OLOV] human gut metagenome; faeces
5635
5711
+
Met
CAT
[ENA]
¡û
>WENV183164413
OLOX01000187
[OLOX] human gut metagenome; faeces
2089
2013
-
Met
CAT
[ENA]
¡û
>WENV183199661
OLPW01000085
[OLPW] human gut metagenome; faeces
77642
77566
-
Met
CAT
[ENA]
¡û
>WENV183277306
OLSA01000413
[OLSA] human gut metagenome; faeces
36008
36084
+
Met
CAT
[ENA]
¡û
>WENV183459959
OMDO01010887
[OMDO] human gut metagenome; feces
1092
1016
-
Met
CAT
[ENA]
¡û
>WENV183541007
OOAK01001634
[OOAK] human gut metagenome; human gut
6729
6653
-
Met
CAT
[ENA]
¡û
>WENV170101424
CEAR01031680
[CEAR] gut metagenome; human stools
2106
2030
-
Met
CAT
[ENA]
¡û
>WENV170108225
CECA01018488
[CECA] gut metagenome; human stools
2324
2248
-
Met
CAT
[ENA]
¡û
>W1910548285
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1780
1856
+
Met
CAT
[ENA]
¡û
>W2010430046
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1780
1856
+
Met
CAT
[ENA]
¡û
>W2110461077
JAFBEE010000007
Bacillota
Alkaliphilus hydrothermalis DSM 25890 [JAFBEE]
130077
130001
-
Met
CAT
[ENA]
¡û
>W2110461115
JAFBEE010000048
Bacillota
Alkaliphilus hydrothermalis DSM 25890 [JAFBEE]
191
267
+
Met
CAT
[ENA]
¡û
>W2110539696
JAGGLI010000029
Bacillota
Acetoanaerobium pronyense DSM 27512 [JAGGLI]
1493
1569
+
Met
CAT
[ENA]
¡û
>W2110539726
JAGGLI010000078
Bacillota
Acetoanaerobium pronyense DSM 27512 [JAGGLI]
1221
1297
+
Met
CAT
[ENA]
¡û
>W2110622742
JAHLQK010000015
Bacillota
Alkaliphilus sp. MSJ-5 [JAHLQK]
1271
1195
-
Met
CAT
[ENA]
¡û
>C211116806
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
2319850
2319926
+
Met
CAT
-
¡û
>C211116852
CP058557
Bacillota
Alkaliphilus sp. B6464 [CP058557]
581223
581147
-
Met
CAT
-
¡û
>C231555404
CP114052
Bacillota
Peptostreptococcus sp. CBA3647 [CP114052]
37852
37926
+
Met
CAT
-
¡û
>C11106366
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
569645
569721
+
Met
CAT
[Ensembl]
¡û
>C11106397
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2509256
2509180
-
Met
CAT
[Ensembl]
¡û
>W1710602790
FUYN01000010
Bacillota
Acetoanaerobium noterae [FUYN]
40375
40299
-
Met
CAT
[ENA]
¡û
>W1710602810
FUYN01000019
Bacillota
Acetoanaerobium noterae [FUYN]
886
962
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK