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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175353 (11 seq.)
>C010534
CP000544
Gammaproteobacteria
Halorhodospira halophila SL1 [CP000544]
1237938
1237862
-
Arg
CCG
[Ensembl]
¡û
>WENV170680304
LFCJ01007611
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6575
6651
+
Arg
CCG
[ENA]
¡û
>WENV170702242
LKMJ01001001
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
22849
22925
+
Arg
CCG
[ENA]
¡û
>C181001642
AP017372
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [AP017372]
64219
64295
+
Arg
CCG
-
¡û
>W09105216
AAOQ01000002
Gammaproteobacteria
Halorhodospira halophila SL1 [AAOQ]
76251
76175
-
Arg
CCG
[ENA]
¡û
>W2110751890
NHSE01000009
Gammaproteobacteria
Halorhodospira halophila IM9620 [NHSE]
5453
5529
+
Arg
CCG
[ENA]
¡û
>W2110752292
NHSN01000017
Gammaproteobacteria
Halorhodospira halophila IM9626 [NHSN]
141048
140972
-
Arg
CCG
[ENA]
¡û
>W2110753380
NRRM01000001
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [NRRM]
167494
167418
-
Arg
CCG
[ENA]
¡û
>W2110753419
NRRN01000001
Gammaproteobacteria
Halorhodospira abdelmalekii DSM 2110 [NRRN]
77121
77197
+
Arg
CCG
[ENA]
¡û
>W2110753494
NRRO01000012
Gammaproteobacteria
Halorhodospira halophila IM 9630 [NRRO]
83703
83779
+
Arg
CCG
[ENA]
¡û
>W2130043448
NRSH01000162
Gammaproteobacteria
Halorhodospira neutriphila DSM 15116 [NRSH]
3831
3755
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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