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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175355 (17 seq.)
>W131063609
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
947539
947615
+
Arg
CCT
[ENA]
¡û
>C010544
CP000544
Gammaproteobacteria
Halorhodospira halophila SL1 [CP000544]
824115
824039
-
Arg
CCT
[Ensembl]
¡û
>w014141
AAOF01000005
Gammaproteobacteria
Nitrococcus mobilis Nb-231 [AAOF]
247177
247255
+
Arg
CCT
[ENA]
¡û
>WENV170682747
LFIK01001055
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
18709
18785
+
Arg
CCT
[ENA]
¡û
>C181001684
AP017372
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [AP017372]
343142
343066
-
Arg
CCT
-
¡û
>W09105234
AAOQ01000008
Gammaproteobacteria
Halorhodospira halophila SL1 [AAOQ]
21234
21158
-
Arg
CCT
[ENA]
¡û
>W1810586408
QFFI01000035
Gammaproteobacteria
Spiribacter halobius E85 [QFFI]
31502
31426
-
Arg
CCT
[ENA]
¡û
>W2010679533
JACDUA010000054
Gammaproteobacteria
Ectothiorhodospiraceae bacterium WFHF3C12 [JACDUA]
1279
1355
+
Arg
CCT
[ENA]
¡û
>W2012309000
WEIF01000001
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WEIF]
284752
284676
-
Arg
CCT
[ENA]
¡û
>W2012325833
WHIW01000001
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WHIW]
284752
284676
-
Arg
CCT
[ENA]
¡û
>C231230830
CP086615
Gammaproteobacteria
Spiribacter sp. E85 [CP086615]
2887035
2887111
+
Arg
CCT
-
¡û
>W2110748335
MBFX01000002
Gammaproteobacteria
Spiribacter salinus M7-304 [MBFX]
210747
210671
-
Arg
CCT
[ENA]
¡û
>W2110753413
NRRM01000021
Gammaproteobacteria
Halorhodospira halochloris DSM 1059 [NRRM]
14446
14522
+
Arg
CCT
[ENA]
¡û
>W2110753480
NRRO01000004
Gammaproteobacteria
Halorhodospira halophila IM 9630 [NRRO]
129087
129011
-
Arg
CCT
[ENA]
¡û
>W2110754316
NRSH01000028
Gammaproteobacteria
Halorhodospira neutriphila DSM 15116 [NRSH]
7184
7260
+
Arg
CCT
[ENA]
¡û
>C241105082
CP046046
Gammaproteobacteria
Spiribacter sp. 2438 [CP046046]
568066
567990
-
Arg
CCT
-
¡û
>C131016247
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
592181
592105
-
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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