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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175414 (106 seq.)
>W1711066270
LSCR01000042
Actinomycetota
Atopobium deltae [LSCR]
148586
148510
-
Met
CAT
[ENA]
¡û
>W131001328
AGXC01000001
Actinomycetota
Atopobium minutum 10063974 [AGXC]
400409
400485
+
Met
CAT
[ENA]
¡û
>WENV180004558
FLRS01022847
[FLRS] metagenome; saliva
234
310
+
Met
CAT
[ENA]
¡û
>WENV180004968
FLRT01023316
[FLRT] metagenome; saliva
77
153
+
Met
CAT
[ENA]
¡û
>WENV180008842
FLSB01178188
[FLSB] metagenome; saliva
5827
5751
-
Met
CAT
[ENA]
¡û
>WENV180009640
FLSC01033305
[FLSC] metagenome; saliva
960
884
-
Met
CAT
[ENA]
¡û
>WENV180010558
FLSD01010905
[FLSD] metagenome; saliva
322
246
-
Met
CAT
[ENA]
¡û
>WENV180011126
FLSI01185974
[FLSI] metagenome; saliva
36
112
+
Met
CAT
[ENA]
¡û
>WENV180011595
FLSK01006716
[FLSK] metagenome; saliva
517
441
-
Met
CAT
[ENA]
¡û
>WENV180550163
OCIZ01025799
[OCIZ] human oral metagenome; human oral
109
33
-
Met
CAT
[ENA]
¡û
>WENV180596846
OCPI01010440
[OCPI] human gut metagenome; faeces
245
321
+
Met
CAT
[ENA]
¡û
>WENV180705384
ODEJ01003796
[ODEJ] human metagenome; G_DNA_Tongue dorsum
4217
4141
-
Met
CAT
[ENA]
¡û
>WENV180708566
ODFJ01003100
[ODFJ] human metagenome; G_DNA_Tongue dorsum
955
1031
+
Met
CAT
[ENA]
¡û
>WENV180719793
ODGJ01005823
[ODGJ] human metagenome; G_DNA_Tongue dorsum
4257
4181
-
Met
CAT
[ENA]
¡û
>WENV180721327
ODGK01075724
[ODGK] human metagenome; G_DNA_Palatine Tonsils
138
214
+
Met
CAT
[ENA]
¡û
>WENV180724475
ODGR01000907
[ODGR] human metagenome; G_DNA_Tongue dorsum
20099
20023
-
Met
CAT
[ENA]
¡û
>WENV180758009
ODHW01004300
[ODHW] human metagenome; G_DNA_Tongue dorsum
697
773
+
Met
CAT
[ENA]
¡û
>WENV180763035
ODIA01000036
[ODIA] human metagenome; G_DNA_Tongue dorsum
40240
40316
+
Met
CAT
[ENA]
¡û
>WENV180769315
ODIG01054415
[ODIG] human metagenome; G_DNA_Tongue dorsum
512
436
-
Met
CAT
[ENA]
¡û
>WENV180773958
ODIJ01004929
[ODIJ] human metagenome; G_DNA_Tongue dorsum
741
817
+
Met
CAT
[ENA]
¡û
>WENV180776181
ODIK01020542
[ODIK] human metagenome; G_DNA_Tongue dorsum
696
620
-
Met
CAT
[ENA]
¡û
>WENV180779567
ODIN01007239
[ODIN] human metagenome; G_DNA_Throat
1462
1386
-
Met
CAT
[ENA]
¡û
>WENV180783282
ODIQ01003786
[ODIQ] human metagenome; G_DNA_Tongue dorsum
4178
4102
-
Met
CAT
[ENA]
¡û
>WENV180790558
ODIT01018769
[ODIT] human metagenome; G_DNA_Tongue dorsum
876
800
-
Met
CAT
[ENA]
¡û
>WENV180792910
ODIW01003775
[ODIW] human metagenome; G_DNA_Tongue dorsum
181
257
+
Met
CAT
[ENA]
¡û
>WENV180794671
ODIZ01003378
[ODIZ] human metagenome; G_DNA_Tongue dorsum
4257
4181
-
Met
CAT
[ENA]
¡û
>WENV180802625
ODJE01004619
[ODJE] human metagenome; G_DNA_Tongue dorsum
337
413
+
Met
CAT
[ENA]
¡û
>WENV180815306
ODJP01000184
[ODJP] human metagenome; G_DNA_Tongue dorsum
20024
19948
-
Met
CAT
[ENA]
¡û
>WENV180820328
ODJR01004506
[ODJR] human metagenome; G_DNA_Tongue dorsum
696
772
+
Met
CAT
[ENA]
¡û
>WENV180821905
ODJS01114337
[ODJS] human metagenome; G_DNA_Tongue dorsum
224
148
-
Met
CAT
[ENA]
¡û
>WENV180830426
ODKB01003049
[ODKB] human metagenome; G_DNA_Tongue dorsum
203
279
+
Met
CAT
[ENA]
¡û
>WENV180854456
ODKX01003714
[ODKX] human metagenome; G_DNA_Tongue dorsum
5686
5610
-
Met
CAT
[ENA]
¡û
>WENV180856402
ODKZ01013592
[ODKZ] human metagenome; G_DNA_Tongue dorsum
483
559
+
Met
CAT
[ENA]
¡û
>WENV180861473
ODLE01004280
[ODLE] human metagenome; G_DNA_Tongue dorsum
658
734
+
Met
CAT
[ENA]
¡û
>WENV180866066
ODLJ01003950
[ODLJ] human metagenome; G_DNA_Tongue dorsum
4258
4182
-
Met
CAT
[ENA]
¡û
>WENV180873317
ODLP01003369
[ODLP] human metagenome; G_DNA_Tongue dorsum
2186
2262
+
Met
CAT
[ENA]
¡û
>WENV180874755
ODLQ01005298
[ODLQ] human metagenome; G_DNA_Tongue dorsum
616
692
+
Met
CAT
[ENA]
¡û
>WENV180879919
ODLZ01003740
[ODLZ] human metagenome; G_DNA_Tongue dorsum
6003
5927
-
Met
CAT
[ENA]
¡û
>WENV180883399
ODMC01004687
[ODMC] human metagenome; G_DNA_Tongue dorsum
5776
5700
-
Met
CAT
[ENA]
¡û
>WENV180889650
ODMN01085468
[ODMN] human metagenome; G_DNA_Supragingival plaque
355
279
-
Met
CAT
[ENA]
¡û
>WENV180890701
ODMO01010100
[ODMO] human metagenome; G_DNA_Tongue dorsum
329
405
+
Met
CAT
[ENA]
¡û
>WENV180897024
ODNI01005330
[ODNI] human metagenome; G_DNA_Tongue dorsum
329
405
+
Met
CAT
[ENA]
¡û
>WENV180899992
ODOJ01000218
[ODOJ] human metagenome; G_DNA_Tongue dorsum
52229
52153
-
Met
CAT
[ENA]
¡û
>WENV180901397
ODOK01000039
[ODOK] human metagenome; G_DNA_Tongue dorsum
36809
36733
-
Met
CAT
[ENA]
¡û
>WENV180920594
ODTH01010765
[ODTH] human metagenome; G_DNA_Tongue dorsum
695
771
+
Met
CAT
[ENA]
¡û
>WENV180929613
ODTN01006513
[ODTN] human metagenome; G_DNA_Tongue dorsum
329
405
+
Met
CAT
[ENA]
¡û
>WENV180931912
ODTP01014782
[ODTP] human metagenome; G_DNA_Tongue dorsum
1348
1272
-
Met
CAT
[ENA]
¡û
>WENV180949154
ODUG01009110
[ODUG] human metagenome; G_DNA_Tongue dorsum
671
747
+
Met
CAT
[ENA]
¡û
>WENV180952594
ODUI01000552
[ODUI] human metagenome; G_DNA_Tongue dorsum
16278
16202
-
Met
CAT
[ENA]
¡û
>WENV180954938
ODUJ01016516
[ODUJ] human metagenome; G_DNA_Tongue dorsum
1262
1186
-
Met
CAT
[ENA]
¡û
>WENV180959108
ODUM01000073
[ODUM] human metagenome; G_DNA_Tongue dorsum
74004
73928
-
Met
CAT
[ENA]
¡û
>WENV180968125
ODUT01010657
[ODUT] human metagenome; G_DNA_Tongue dorsum
368
444
+
Met
CAT
[ENA]
¡û
>WENV180985716
ODVJ01013189
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1431
1355
-
Met
CAT
[ENA]
¡û
>WENV180988929
ODVL01020608
[ODVL] human metagenome; G_DNA_Tongue dorsum
619
543
-
Met
CAT
[ENA]
¡û
>WENV180990076
ODVN01000349
[ODVN] human metagenome; G_DNA_Tongue dorsum
45231
45307
+
Met
CAT
[ENA]
¡û
>WENV181013757
ODWN01003619
[ODWN] human metagenome; G_DNA_Tongue dorsum
5724
5648
-
Met
CAT
[ENA]
¡û
>WENV181016634
ODWR01003497
[ODWR] human metagenome; G_DNA_Tongue dorsum
4257
4181
-
Met
CAT
[ENA]
¡û
>WENV181021096
ODWV01002200
[ODWV] human metagenome; G_DNA_Tongue dorsum
1082
1158
+
Met
CAT
[ENA]
¡û
>WENV181027961
ODXD01156660
[ODXD] human metagenome; G_DNA_Buccal mucosa
78
2
-
Met
CAT
[ENA]
¡û
>WENV181032775
ODXN01000620
[ODXN] human metagenome; G_DNA_Tongue dorsum
20222
20146
-
Met
CAT
[ENA]
¡û
>WENV181038831
ODXQ01005111
[ODXQ] human metagenome; G_DNA_Tongue dorsum
6105
6029
-
Met
CAT
[ENA]
¡û
>WENV181041059
ODXS01003649
[ODXS] human metagenome; G_DNA_Tongue dorsum
5689
5613
-
Met
CAT
[ENA]
¡û
>WENV181045668
ODXW01000966
[ODXW] human metagenome; G_DNA_Tongue dorsum
14409
14333
-
Met
CAT
[ENA]
¡û
>WENV181057717
ODYL01000832
[ODYL] human metagenome; G_DNA_Tongue dorsum
14230
14306
+
Met
CAT
[ENA]
¡û
>WENV181069106
ODZZ01011446
[ODZZ] human metagenome; G_DNA_Tongue dorsum
852
776
-
Met
CAT
[ENA]
¡û
>WENV181073484
OEAO01000310
[OEAO] human metagenome; G_DNA_Tongue dorsum
5873
5797
-
Met
CAT
[ENA]
¡û
>WENV181086302
OEAY01000339
[OEAY] human metagenome; G_DNA_Tongue dorsum
9884
9960
+
Met
CAT
[ENA]
¡û
>WENV181095204
OEBY01004268
[OEBY] human metagenome; G_DNA_Tongue dorsum
4257
4181
-
Met
CAT
[ENA]
¡û
>WENV181097342
OECA01006417
[OECA] human metagenome; G_DNA_Tongue dorsum
680
756
+
Met
CAT
[ENA]
¡û
>WENV181102033
OECT01000683
[OECT] human metagenome; G_DNA_Tongue dorsum
15182
15106
-
Met
CAT
[ENA]
¡û
>WENV181104814
OEED01000207
[OEED] human metagenome; G_DNA_Tongue dorsum
2383
2459
+
Met
CAT
[ENA]
¡û
>WENV181109208
OEEJ01014855
[OEEJ] human metagenome; G_DNA_Tongue dorsum
916
840
-
Met
CAT
[ENA]
¡û
>WENV181112315
OEEL01000375
[OEEL] human metagenome; G_DNA_Tongue dorsum
32038
31962
-
Met
CAT
[ENA]
¡û
>WENV181115116
OEEO01022642
[OEEO] human metagenome; G_DNA_Supragingival plaque
862
786
-
Met
CAT
[ENA]
¡û
>WENV181124731
OEFT01001138
[OEFT] human metagenome; G_DNA_Tongue dorsum
7504
7580
+
Met
CAT
[ENA]
¡û
>WENV181128865
OEFX01000381
[OEFX] human metagenome; G_DNA_Tongue dorsum
14582
14506
-
Met
CAT
[ENA]
¡û
>WENV181135180
OEGG01004943
[OEGG] human metagenome; G_DNA_Tongue dorsum
507
583
+
Met
CAT
[ENA]
¡û
>WENV181138588
OEGN01000224
[OEGN] human metagenome; G_DNA_Tongue dorsum
1716
1792
+
Met
CAT
[ENA]
¡û
>WENV181141632
OEGT01011078
[OEGT] human metagenome; G_DNA_Throat
815
739
-
Met
CAT
[ENA]
¡û
>WENV181150460
OEHW01002779
[OEHW] human metagenome; G_DNA_Tongue dorsum
8788
8864
+
Met
CAT
[ENA]
¡û
>WENV181175748
OEJQ01027454
[OEJQ] human metagenome; G_DNA_Tongue dorsum
584
660
+
Met
CAT
[ENA]
¡û
>WENV181218329
OFCM01000172
[OFCM] metagenome; Human gut stool
337
413
+
Met
CAT
[ENA]
¡û
>WENV181222396
OFDA01003233
[OFDA] metagenome; Human gut stool
630
554
-
Met
CAT
[ENA]
¡û
>W141145502
AWUQ01000004
Actinomycetota
Atopobium sp. BV3Ac4 [AWUQ]
179214
179138
-
Met
CAT
[ENA]
¡û
>W141170348
AXXR01000003
Actinomycetota
Atopobium fossor DSM 15642 [AXXR]
256834
256758
-
Met
CAT
[ENA]
¡û
>WENV181801497
OGSB01000401
[OGSB] human gut metagenome; fecal sample 5 from infant 3
10498
10574
+
Met
CAT
[ENA]
¡û
>WENV181810627
OGSV01000498
[OGSV] human gut metagenome; fecal sample 4 from infant 3
2619
2543
-
Met
CAT
[ENA]
¡û
>WENV181916925
OGYG01000916
[OGYG] human gut metagenome; faeces
797
873
+
Met
CAT
[ENA]
¡û
>WENV182815907
OJYV01000026
[OJYV] human gut metagenome; human gut
4302
4226
-
Met
CAT
[ENA]
¡û
>WENV182848450
OKKH01000341
[OKKH] human gut metagenome; human gut
4740
4664
-
Met
CAT
[ENA]
¡û
>WENV182860010
OKOR01000001
[OKOR] human gut metagenome; human gut
204998
205074
+
Met
CAT
[ENA]
¡û
>WENV182941242
OKVG01000852
[OKVG] human gut metagenome; human gut
5998
5922
-
Met
CAT
[ENA]
¡û
>WENV182943771
OKVI01000787
[OKVI] human gut metagenome; human gut
10410
10486
+
Met
CAT
[ENA]
¡û
>W141382697
JDFG01000028
Actinomycetota
Atopobium sp. BS2 [JDFG]
53531
53607
+
Met
CAT
[ENA]
¡û
>W141382729
JDFH01000002
Actinomycetota
Atopobium sp. ICM42b [JDFH]
114979
114903
-
Met
CAT
[ENA]
¡û
>W09108307
ABTD01000001
Actinomycetota
Lancefieldella parvula DSM 20469 [ABTD]
392587
392511
-
Met
CAT
[ENA]
¡û
>W1911541890
OPYK01000008
Actinomycetota
Atopobium sp. Marseille-P4126 [OPYK]
59303
59227
-
Met
CAT
[ENA]
¡û
>W2011170759
OPYK01000008
Actinomycetota
Atopobium sp. Marseille-P4126 [OPYK]
59303
59227
-
Met
CAT
[ENA]
¡û
>C231378343
CP097092
Actinomycetota
Lancefieldella parvula [CP097092]
1389246
1389170
-
Met
CAT
-
¡û
>C10100629
CP001721
Actinomycetota
Lancefieldella parvula DSM 20469 [CP001721]
1319157
1319081
-
Met
CAT
[Ensembl]
¡û
>W1511351327
JRND01000017
Actinomycetota
Lancefieldella parvula DNF00906 [JRND]
64778
64702
-
Met
CAT
[ENA]
¡û
>W11134274
AEDQ01000010
Actinomycetota
Fannyhessea vaginae PB189-T1-4 [AEDQ]
23694
23618
-
Met
CAT
[ENA]
¡û
>W1610528821
JQBO01000003
Actinomycetota
Atopobium minutum [JQBO]
756375
756299
-
Met
CAT
[ENA]
¡û
>W1610906840
LSCR01000042
Actinomycetota
Atopobium deltae [LSCR]
148586
148510
-
Met
CAT
[ENA]
¡û
>W1710535096
FNSH01000001
Actinomycetota
Atopobium minutum [FNSH]
776269
776193
-
Met
CAT
[ENA]
¡û
>W1710630411
JQBO01000003
Actinomycetota
Atopobium minutum [JQBO]
756375
756299
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK