This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175586 (38 seq.)
>W1710821475
LKTL01000008
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
18802
18878
+
Val
GAC
[ENA]
¡û
>W1710821476
LKTL01000008
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
18894
18970
+
Val
GAC
[ENA]
¡û
>W131225203
AUDJ01000027
Gammaproteobacteria
Ferrimonas kyonanensis DSM 18153 [AUDJ]
31870
31794
-
Val
GAC
[ENA]
¡û
>W131228987
AUGL01000006
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
202658
202734
+
Val
GAC
[ENA]
¡û
>W1711624592
MPHK01000012
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
18771
18847
+
Val
GAC
[ENA]
¡û
>C171108631
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
2423675
2423599
-
Val
GAC
-
¡û
>C171108632
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
2423583
2423507
-
Val
GAC
-
¡û
>WENV170023693
BCQL01001325
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
3
79
+
Val
GAC
[ENA]
¡û
>WENV170023694
BCQL01001325
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
95
171
+
Val
GAC
[ENA]
¡û
>WENV170025313
BCQL01283462
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2
78
+
Val
GAC
[ENA]
¡û
>W1910676920
MCTY01000091
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
79280
79204
-
Val
GAC
[ENA]
¡û
>W1910677460
MCUF01000024
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
157003
156927
-
Val
GAC
[ENA]
¡û
>W1910679463
MCVG01000002
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
29126
29202
+
Val
GAC
[ENA]
¡û
>W1910679644
MCVI01000011
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
107309
107233
-
Val
GAC
[ENA]
¡û
>W1911710135
QPQU01000011
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
198088
198164
+
Val
GAC
[ENA]
¡û
>W1911710136
QPQU01000011
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
198180
198256
+
Val
GAC
[ENA]
¡û
>W2010810651
MCTY01000091
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
79280
79204
-
Val
GAC
[ENA]
¡û
>W2010811193
MCUF01000024
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
157003
156927
-
Val
GAC
[ENA]
¡û
>W2010813198
MCVG01000002
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
29126
29202
+
Val
GAC
[ENA]
¡û
>W2010813379
MCVI01000011
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
107309
107233
-
Val
GAC
[ENA]
¡û
>W2011284613
QPQU01000011
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
198088
198164
+
Val
GAC
[ENA]
¡û
>W2011284614
QPQU01000011
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
198180
198256
+
Val
GAC
[ENA]
¡û
>W2011701844
SWCI01000002
Gammaproteobacteria
Ferrimonas sp. IMCC35001 [SWCI]
301037
301113
+
Val
GAC
[ENA]
¡û
>W2012070511
VKHR01000014
Gammaproteobacteria
Shewanella sp. TC10 [VKHR]
24685
24609
-
Val
GAC
[ENA]
¡û
>W2012070512
VKHR01000014
Gammaproteobacteria
Shewanella sp. TC10 [VKHR]
24583
24507
-
Val
GAC
[ENA]
¡û
>W2110069181
BPEV01000025
Gammaproteobacteria
Shewanella sp. KT0246 [BPEV]
15905
15981
+
Val
GAC
[ENA]
¡û
>W2110556850
JAGJDZ010000012
Gammaproteobacteria
Shewanella sp. MMG014 [JAGJDZ]
153892
153816
-
Val
GAC
[ENA]
¡û
>W2110556851
JAGJDZ010000012
Gammaproteobacteria
Shewanella sp. MMG014 [JAGJDZ]
153800
153724
-
Val
GAC
[ENA]
¡û
>C211156658
CP062058
Gammaproteobacteria
Shewanella sp. WPAGA9 [CP062058]
1808520
1808444
-
Val
GAC
-
¡û
>C211156659
CP062058
Gammaproteobacteria
Shewanella sp. WPAGA9 [CP062058]
1808428
1808352
-
Val
GAC
-
¡û
>C231127997
CP072679
Gammaproteobacteria
Ferrimonas sp. SCSIO 43195 [CP072679]
2424323
2424399
+
Val
GAC
-
¡û
>C241011681
AP027368
Gammaproteobacteria
Ferrimonas sp. YFM [AP027368]
2246793
2246717
-
Val
GAC
-
¡û
>C241274096
CP126972
Gammaproteobacteria
Shewanella goraebulensis DAU312 [CP126972]
2484905
2484981
+
Val
GAC
-
¡û
>W1610685437
LKTL01000008
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
18802
18878
+
Val
GAC
[ENA]
¡û
>W1610685438
LKTL01000008
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
18894
18970
+
Val
GAC
[ENA]
¡û
>W1611032748
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
559884
559960
+
Val
GAC
[ENA]
¡û
>W1611032749
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
559976
560052
+
Val
GAC
[ENA]
¡û
>W1710519088
FNEM01000006
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
133057
132981
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK