This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175660 (80 seq.)
>W1711617520
MPAN01000048
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
127
203
+
Asp
GTC
[ENA]
¡û
>W1711618119
MPBA01000004
Bacillota
Leuconostoc pseudomesenteroides [MPBA]
84037
83961
-
Asp
GTC
[ENA]
¡û
>W1711618138
MPBA01000014
Bacillota
Leuconostoc pseudomesenteroides [MPBA]
43425
43350
-
Asp
GTC
[ENA]
¡û
>W1711622651
MPEG01000006
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
1229
1304
+
Asp
GTC
[ENA]
¡û
>W1711622671
MPEG01000045
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
127
203
+
Asp
GTC
[ENA]
¡û
>W1711624815
MPHN01000001
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
141834
141909
+
Asp
GTC
[ENA]
¡û
>W1711624837
MPHN01000027
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
23357
23281
-
Asp
GTC
[ENA]
¡û
>W1711625099
MPHT01000001
Bacillota
Leuconostoc pseudomesenteroides [MPHT]
20955
21030
+
Asp
GTC
[ENA]
¡û
>W1711625128
MPHT01000028
Bacillota
Leuconostoc pseudomesenteroides [MPHT]
224
300
+
Asp
GTC
[ENA]
¡û
>W1711627136
MPLG01000004
Bacillota
Leuconostoc pseudomesenteroides [MPLG]
84037
83961
-
Asp
GTC
[ENA]
¡û
>W1711627154
MPLG01000008
Bacillota
Leuconostoc pseudomesenteroides [MPLG]
1220
1295
+
Asp
GTC
[ENA]
¡û
>W1711627411
MPLL01000008
Bacillota
Leuconostoc lactis [MPLL]
1235
1310
+
Asp
GTC
[ENA]
¡û
>W1711627556
MPLO01000006
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
125239
125164
-
Asp
GTC
[ENA]
¡û
>W1711627573
MPLO01000009
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
319
395
+
Asp
GTC
[ENA]
¡û
>C171037166
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
29097
29172
+
Asp
GTC
-
¡û
>C171037181
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
142252
142327
+
Asp
GTC
-
¡û
>C171037207
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
1773884
1773808
-
Asp
GTC
-
¡û
>C171047457
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
541748
541823
+
Asp
GTC
-
¡û
>C171047473
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
624828
624903
+
Asp
GTC
-
¡û
>WENV180566422
OCLI01018811
[OCLI] human gut metagenome; human gut
131
206
+
Asp
GTC
[ENA]
¢þ
>W141244872
CAKV01000002
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
23264
23188
-
Asp
GTC
[ENA]
¡û
>W141244893
CAKV01000032
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
405
330
-
Asp
GTC
[ENA]
¡û
>WENV182610625
OJJW01000042
[OJJW] metagenome; faeces
46778
46703
-
Asp
GTC
[ENA]
¢þ
>W141292108
JAUI01000015
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
63
139
+
Asp
GTC
[ENA]
¡û
>W141292122
JAUI01000018
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
975
1050
+
Asp
GTC
[ENA]
¡û
>C181054891
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
28728
28803
+
Asp
GTC
-
¡û
>C181054906
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
151186
151261
+
Asp
GTC
-
¡û
>C181054932
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
1765565
1765491
-
Asp
GTC
-
¡û
>W141695536
JMEA01000027
Bacillota
Leuconostoc lactis [JMEA]
1096
1171
+
Asp
GTC
[ENA]
¡û
>W1910181187
BJLS01000010
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
76158
76084
-
Asp
GTC
[ENA]
¡û
>W1910181201
BJLS01000027
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
911
986
+
Asp
GTC
[ENA]
¡û
>W1910181844
BJMJ01000045
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
414
339
-
Asp
GTC
[ENA]
¡û
>C141000434
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
151278
151353
+
Asp
GTC
[Ensembl]
¡û
>C141000460
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
1659581
1659505
-
Asp
GTC
[Ensembl]
¡û
>W1911177206
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1705312
1705237
-
Asp
GTC
[ENA]
¡û
>W1911177222
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1623229
1623154
-
Asp
GTC
[ENA]
¡û
>W1911495482
OBMW01000030
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
10995
10921
-
Asp
GTC
[ENA]
¡û
>W1911495498
OBMW01000033
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
422
347
-
Asp
GTC
[ENA]
¡û
>W1911533926
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
1229
1304
+
Asp
GTC
[ENA]
¡û
>W1911533958
OKRL01000003
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
127
201
+
Asp
GTC
[ENA]
¡û
>W1911538499
OMON01000003
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
319
393
+
Asp
GTC
[ENA]
¡û
>W1911538513
OMON01000005
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
1037
1112
+
Asp
GTC
[ENA]
¡û
>W1911540008
ONZM01000019
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
9219
9145
-
Asp
GTC
[ENA]
¡û
>W1810705500
QMJI01000060
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
1135
1210
+
Asp
GTC
[ENA]
¡û
>W1810705582
QMJK01000029
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
1135
1210
+
Asp
GTC
[ENA]
¡û
>C11112821
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1928436
1928361
-
Asp
GTC
[Ensembl]
¡û
>C11112837
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1772477
1772402
-
Asp
GTC
[Ensembl]
¡û
>C11112847
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1684142
1684066
-
Asp
GTC
[Ensembl]
¡û
>W1511469014
JVUV01000029
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
33249
33174
-
Asp
GTC
[ENA]
¡û
>W1511469055
JVUV01000055
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
58479
58404
-
Asp
GTC
[ENA]
¡û
>W11137096
AEGQ01000002
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
418
343
-
Asp
GTC
[ENA]
¡û
>W1511585396
LAYN01000007
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
1004
1079
+
Asp
GTC
[ENA]
¡û
>W1511585409
LAYN01000012
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
19420
19496
+
Asp
GTC
[ENA]
¡û
>W11184709
BACM01000006
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
419
344
-
Asp
GTC
[ENA]
¡û
>C161100080
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
844662
844737
+
Asp
GTC
[Ensembl]
¡û
>C161100096
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
948734
948809
+
Asp
GTC
[Ensembl]
¡û
>C161107394
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1940001
1939926
-
Asp
GTC
[Ensembl]
¡û
>C161107410
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1812809
1812734
-
Asp
GTC
[Ensembl]
¡û
>C161107420
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1712007
1711931
-
Asp
GTC
[Ensembl]
¡û
>W1610187662
FBSX01000018
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
10973
10897
-
Asp
GTC
[ENA]
¡û
>W1610187688
FBSX01000027
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
991
1066
+
Asp
GTC
[ENA]
¡û
>W1610187699
FBSY01000005
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
10951
10875
-
Asp
GTC
[ENA]
¡û
>W1610187715
FBSY01000012
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
969
1044
+
Asp
GTC
[ENA]
¡û
>W1610187742
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
969
1044
+
Asp
GTC
[ENA]
¡û
>W1610187752
FBTB01000008
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
51
127
+
Asp
GTC
[ENA]
¡û
>W1610187845
FBTD01000011
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
56999
56924
-
Asp
GTC
[ENA]
¡û
>W1610187851
FBTD01000018
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
61
137
+
Asp
GTC
[ENA]
¡û
>W1610187861
FBTU01000009
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
11036
10960
-
Asp
GTC
[ENA]
¡û
>W1610187880
FBTU01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
991
1066
+
Asp
GTC
[ENA]
¡û
>C131007842
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1647511
1647435
-
Asp
GTC
[Ensembl]
¡û
>W1710189278
FBSX01000018
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
10973
10897
-
Asp
GTC
[ENA]
¡û
>W1710189304
FBSX01000027
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
991
1066
+
Asp
GTC
[ENA]
¡û
>W1710189315
FBSY01000005
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
10951
10875
-
Asp
GTC
[ENA]
¡û
>W1710189331
FBSY01000012
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
969
1044
+
Asp
GTC
[ENA]
¡û
>W1710189358
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
969
1044
+
Asp
GTC
[ENA]
¡û
>W1710189368
FBTB01000008
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
51
127
+
Asp
GTC
[ENA]
¡û
>W1710189461
FBTD01000011
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
56999
56924
-
Asp
GTC
[ENA]
¡û
>W1710189467
FBTD01000018
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
61
137
+
Asp
GTC
[ENA]
¡û
>W1710189477
FBTU01000009
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
11036
10960
-
Asp
GTC
[ENA]
¡û
>W1710189496
FBTU01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
991
1066
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK