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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175677 (25 seq.)
>W131234626
AUKX01000003
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
147873
147949
+
Ala
GGC
[ENA]
¡û
>WENV183522129
OMOM01000151
[OMOM] seawater metagenome; Sea water
8439
8513
+
Ala
GGC
[ENA]
¡û
>WENV183624590
OOGD01055488
[OOGD] marine metagenome; sea ice
443
369
-
Ala
GGC
[ENA]
¡û
>WENV170130463
CENR01000157
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
168
92
-
Ala
GGC
[ENA]
¡û
>WENV170130825
CENR01030279
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
21827
21751
-
Ala
GGC
[ENA]
¡û
>WENV170276641
CERO01004173
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5101
5177
+
Ala
GGC
[ENA]
¡û
>C191127750
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
3206952
3207028
+
Ala
GGC
-
¡û
>C191182106
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
4472347
4472423
+
Ala
GGC
-
¡û
>W1810789224
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1248674
1248748
+
Ala
GGC
[ENA]
¡û
>W2011368855
RBCJ01000001
Bacteroidota
Pseudozobellia sp. CCMM003 [RBCJ]
915453
915529
+
Ala
GGC
[ENA]
¡û
>W2011531828
SBJH01000095
Bacteroidota
Olivibacter sp. XZL3 [SBJH]
49144
49218
+
Ala
GGC
[ENA]
¡û
>W2011634661
SMGO01000001
Bacteroidota
Pedobacter bauzanensis DSM 22554 [SMGO]
1132812
1132738
-
Ala
GGC
[ENA]
¡û
>W2012039272
VIKU02000001
Bacteroidota
Flavobacteriaceae bacterium TP-CH-4 [VIKU]
1386181
1386107
-
Ala
GGC
[ENA]
¡û
>W2012041953
VIRZ01000001
Bacteroidota
Cellulophaga sp. RHA_52 [VIRZ]
1004272
1004196
-
Ala
GGC
[ENA]
¡û
>C211118243
CP058988
Bacteroidota
Cellulophaga sp. HaHa_2_95 [CP058988]
636251
636325
+
Ala
GGC
-
¡û
>C211118346
CP058990
Bacteroidota
Cellulophaga sp. HaHaR_3_176 [CP058990]
3106033
3105959
-
Ala
GGC
-
¡û
>C211134557
CP060497
Bacteroidota
Olivibacter sp. SDN3 [CP060497]
2830049
2829975
-
Ala
GGC
-
¡û
>C231569551
CP115819
Bacteroidota
Cellulophaga omnivescoria MSK1 [CP115819]
1331039
1331113
+
Ala
GGC
-
¡û
>C241355106
CP140159
Bacteroidota
Cellulophaga lytica DSMZ 7489 [CP140159]
3152348
3152272
-
Ala
GGC
-
¡û
>W1511320923
JQCT01000006
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
180679
180603
-
Ala
GGC
[ENA]
¡û
>C121010144
CP003280
Bacteroidota
Aequorivita sublithincola DSM 14238 [CP003280]
1132692
1132768
+
Ala
GGC
[Ensembl]
¡û
>C161027986
CP010535
Bacteroidota
Sediminicola sp. YIK13 [CP010535]
2834305
2834381
+
Ala
GGC
[Ensembl]
¡û
>W1610082686
BDGL01000009
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
239942
240016
+
Ala
GGC
[ENA]
¡û
>W1710081860
BDGL01000009
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
239942
240016
+
Ala
GGC
[ENA]
¡û
>W1710543696
FOAF01000005
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
117587
117661
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK