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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175748 (95 seq.)
>W1710785705
LJIC01000022
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
71196
71272
+
Met
CAT
[ENA]
¡û
>W1711302658
MAJC01000002
Alphaproteobacteria
Thalassospira sp. KO164 [MAJC]
4534926
4534850
-
Met
CAT
[ENA]
¡û
>W1711339726
MCAO01000005
Alphaproteobacteria
Thalassospira sp. MIT1004 [MCAO]
105458
105382
-
Met
CAT
[ENA]
¡û
>W131217210
ATWN01000003
Alphaproteobacteria
Thalassospira lucentensis QMT2 = DSM 14000 [ATWN]
499363
499287
-
Met
CAT
[ENA]
¡û
>W131219295
ATYL01000001
Alphaproteobacteria
Geminicoccus roseus DSM 18922 [ATYL]
628266
628190
-
Met
CAT
[ENA]
¡û
>W131219298
ATYL01000002
Alphaproteobacteria
Geminicoccus roseus DSM 18922 [ATYL]
83545
83621
+
Met
CAT
[ENA]
¡û
>W131219308
ATYL01000002
Alphaproteobacteria
Geminicoccus roseus DSM 18922 [ATYL]
1964854
1964930
+
Met
CAT
[ENA]
¡û
>W131219328
ATYL01000002
Alphaproteobacteria
Geminicoccus roseus DSM 18922 [ATYL]
3591083
3591007
-
Met
CAT
[ENA]
¡û
>WENV180025890
FTIQ01501626
[FTIQ] metagenome; soil
101
177
+
fMet
CAT
[ENA]
¢þ
>WENV180352241
OBLQ010202483
[OBLQ] soil metagenome; soil
529
605
+
fMet
CAT
[ENA]
¢þ
>WENV180588203
OCOP01007394
[OCOP] marine metagenome; water
755
679
-
fMet
CAT
[ENA]
¢þ
>W141082095
ATSX01000009
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
5784
5860
+
Met
CAT
[ENA]
¡û
>W141082552
AUNC01000016
Alphaproteobacteria
Thalassospira permensis NBRC 106175 [AUNC]
65735
65659
-
Met
CAT
[ENA]
¡û
>WENV181155463
OEID01181868
[OEID] soil metagenome; soil
128
52
-
fMet
CAT
[ENA]
¢þ
>WENV181163394
OEIQ01012524
[OEIQ] soil metagenome; soil
184
108
-
fMet
CAT
[ENA]
¢þ
>WENV181165555
OEIS01031497
[OEIS] soil metagenome; soil
307
383
+
fMet
CAT
[ENA]
¢þ
>WENV181221726
OFCW01005085
[OFCW] microbial mat metagenome; Microbial Mat
475
551
+
fMet
CAT
[ENA]
¢þ
>WENV181223603
OFDC01045247
[OFDC] hot springs metagenome; Water
95
19
-
fMet
CAT
[ENA]
¢þ
>WENV181227351
OFDN01007651
[OFDN] hot springs metagenome; Water
4174
4098
-
fMet
CAT
[ENA]
¢þ
>WENV181233358
OFES01027802
[OFES] coral metagenome; NA
1445
1521
+
fMet
CAT
[ENA]
¢þ
>WENV181323203
OFKW01030673
[OFKW] marine metagenome; sea ice
139
63
-
fMet
CAT
[ENA]
¢þ
>W141241685
CAHM01000076
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
8
84
+
Met
CAT
[ENA]
¡û
>W141241703
CAHM01000218
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
8
84
+
Met
CAT
[ENA]
¡û
>WENV182549014
OJBX01006771
[OJBX] seawater metagenome; Sea water
779
855
+
fMet
CAT
[ENA]
¢þ
>WENV182553558
OJCR01010861
[OJCR] seawater metagenome; Sea water
1259
1183
-
fMet
CAT
[ENA]
¢þ
>WENV182565046
OJEF01035726
[OJEF] seawater metagenome; Sea water
523
599
+
fMet
CAT
[ENA]
¢þ
>WENV182572288
OJFL01002422
[OJFL] seawater metagenome; Sea water
4457
4381
-
fMet
CAT
[ENA]
¢þ
>WENV182573614
OJFP01005942
[OJFP] seawater metagenome; Sea water
1492
1416
-
fMet
CAT
[ENA]
¢þ
>WENV182579535
OJGS01019164
[OJGS] seawater metagenome; Sea water
773
849
+
fMet
CAT
[ENA]
¢þ
>WENV182580518
OJGW01002055
[OJGW] seawater metagenome; Sea water
4631
4555
-
fMet
CAT
[ENA]
¢þ
>WENV182584831
OJHG01014710
[OJHG] seawater metagenome; Sea water
579
503
-
fMet
CAT
[ENA]
¢þ
>WENV182586745
OJHK01004086
[OJHK] seawater metagenome; Sea water
932
1008
+
fMet
CAT
[ENA]
¢þ
>W141275998
JADL01000008
Alphaproteobacteria
Rhodospirillales bacterium URHD0088 [JADL]
78
2
-
Met
CAT
[ENA]
¡û
>W141276011
JADL01000015
Alphaproteobacteria
Rhodospirillales bacterium URHD0088 [JADL]
18
94
+
Met
CAT
[ENA]
¡û
>W141276015
JADL01000019
Alphaproteobacteria
Rhodospirillales bacterium URHD0088 [JADL]
42817
42741
-
Met
CAT
[ENA]
¡û
>W141276018
JADL01000021
Alphaproteobacteria
Rhodospirillales bacterium URHD0088 [JADL]
78
2
-
Met
CAT
[ENA]
¡û
>WENV183062425
OLID01010302
[OLID] seawater metagenome; Sea water
549
473
-
fMet
CAT
[ENA]
¢þ
>WENV183631109
OOGU01032762
[OOGU] marine metagenome; sea ice
414
490
+
fMet
CAT
[ENA]
¢þ
>WENV183672654
ORJL011195680
[ORJL] groundwater metagenome; groundwater
296
372
+
fMet
CAT
[ENA]
¢þ
>WENV183677573
ORJL011772992
[ORJL] groundwater metagenome; groundwater
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV183677576
ORJL011773387
[ORJL] groundwater metagenome; groundwater
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV183692998
ORMF012004974
[ORMF] groundwater metagenome; groundwater
250171
250095
-
fMet
CAT
[ENA]
¢þ
>WENV183697113
OUNJ010003977
[OUNJ] metagenome; soil
174
250
+
fMet
CAT
[ENA]
¢þ
>WENV170002387
AGTN01014982
[AGTN] bioreactor metagenome; poplar biomass
614
690
+
Met
CAT
[ENA]
¢þ
>WENV170002928
AGTN01171562
[AGTN] bioreactor metagenome; poplar biomass
367
291
-
Met
CAT
[ENA]
¢þ
>WENV170003553
AGTN01372873
[AGTN] bioreactor metagenome; poplar biomass
1213
1289
+
Met
CAT
[ENA]
¢þ
>WENV170004360
AGTN01657302
[AGTN] bioreactor metagenome; poplar biomass
12039
11963
-
Met
CAT
[ENA]
¢þ
>WENV170155183
CEOG01000625
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
878
954
+
Met
CAT
[ENA]
¢þ
>WENV170233886
CEQJ01075328
[CEQJ] marine metagenome genome assembly TARA_076_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
745
821
+
Met
CAT
[ENA]
¢þ
>WENV170261754
CERB01107777
[CERB] marine metagenome genome assembly TARA_072_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
747
823
+
Met
CAT
[ENA]
¢þ
>WENV170605038
FUWD010442623
[FUWD] metagenome; unknown
212
288
+
Met
CAT
[ENA]
¢þ
>WENV170682815
LFIK01001451
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
9524
9448
-
Met
CAT
[ENA]
¢þ
>WENV170838104
MDSZ01161633
[MDSZ] marine metagenome; seawater
1116
1040
-
Met
CAT
[ENA]
¢þ
>WENV170845063
MDTA01017565
[MDTA] marine metagenome; seawater
115459
115383
-
Met
CAT
[ENA]
¢þ
>WENV170962648
MRWF01022524
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2559
2635
+
Met
CAT
[ENA]
¢þ
>C191100480
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
145606
145682
+
Met
CAT
-
¡û
>C191100485
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
209707
209783
+
Met
CAT
-
¡û
>C191100489
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
265837
265913
+
Met
CAT
-
¡û
>C191100516
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
1763303
1763227
-
Met
CAT
-
¡û
>W1910442776
FWFM01000038
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
6855
6931
+
Met
CAT
[ENA]
¡û
>W1911424871
NXGX01000007
Alphaproteobacteria
Thalassospira lohafexi 139Z-12 [NXGX]
267
343
+
Met
CAT
[ENA]
¡û
>W1911705907
QORV01000008
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60006 [QORV]
78
2
-
Met
CAT
[ENA]
¡û
>W1911705990
QORW01000002
Alphaproteobacteria
Dongia deserti SYSU D60009 [QORW]
445045
444969
-
Met
CAT
[ENA]
¡û
>W1911706019
QORW01000020
Alphaproteobacteria
Dongia deserti SYSU D60009 [QORW]
109172
109096
-
Met
CAT
[ENA]
¡û
>W1911706032
QORW01000039
Alphaproteobacteria
Dongia deserti SYSU D60009 [QORW]
77
1
-
Met
CAT
[ENA]
¡û
>W1911708757
QOZR01000025
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
15208
15132
-
Met
CAT
[ENA]
¡û
>W1810594731
QGDJ01000030
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
161
85
-
Met
CAT
[ENA]
¡û
>W1810604014
QGLT01000001
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
772061
771985
-
Met
CAT
[ENA]
¡û
>W1810604034
QGLT01000004
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
19
95
+
Met
CAT
[ENA]
¡û
>W1810604050
QGLT01000010
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
109
33
-
Met
CAT
[ENA]
¡û
>W1810659397
QJKA01000011
Alphaproteobacteria
Thalassospira sp. 11-3 [QJKA]
184
260
+
Met
CAT
[ENA]
¡û
>C151006564
CP004388
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [CP004388]
166500
166576
+
Met
CAT
[Ensembl]
¡û
>C151006598
CP004388
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [CP004388]
3162825
3162749
-
Met
CAT
[Ensembl]
¡û
>SRA1020972
SRR035083.191518
454 Sequencing (SRP001804)
204
280
+
Met
CAT
[SRA]
>SRA1022427
SRR035083.404099
454 Sequencing (SRP001804)
81
157
+
Met
CAT
[SRA]
>C151073487
CP010855
Alphaproteobacteria
Marinovum algicola DG 898 [CP010855]
226670
226746
+
Met
CAT
[Ensembl]
¡û
>C151073490
CP010855
Alphaproteobacteria
Marinovum algicola DG 898 [CP010855]
436955
437031
+
Met
CAT
[Ensembl]
¡û
>SRA1033112
SRR035088.176968
454 Sequencing (SRP001809)
281
357
+
Met
CAT
[SRA]
>SRA1033415
SRR035088.250016
454 Sequencing (SRP001809)
257
181
-
Met
CAT
[SRA]
>ENV09003532
ADGO01079241
Compost metagenome contig00001
780
856
+
Met
CAT
[ENA]
¡û
>W1511528520
JYII01000007
Alphaproteobacteria
Thalassospira sp. HJ [JYII]
221
297
+
Met
CAT
[ENA]
¡û
>W11179036
AGFR01000021
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
10223
10299
+
Met
CAT
[ENA]
¡û
>C161001636
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
912070
912146
+
Met
CAT
[Ensembl]
¡û
>C161048040
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
382490
382414
-
Met
CAT
-
¡û
>C161108094
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
3505689
3505613
-
Met
CAT
[Ensembl]
¡û
>W1610649511
LJIC01000022
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
71196
71272
+
Met
CAT
[ENA]
¡û
>W1611052983
MAJC01000002
Alphaproteobacteria
Thalassospira sp. KO164 [MAJC]
4534926
4534850
-
Met
CAT
[ENA]
¡û
>W1710015486
AQQS01000013
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
139140
139216
+
Met
CAT
[ENA]
¡û
>W1710516831
FNCV01000025
Alphaproteobacteria
Roseospirillum parvum [FNCV]
5968
6044
+
Met
CAT
[ENA]
¡û
>W1710537414
FNTU01000002
Alphaproteobacteria
Thalassospira permensis KO164 [FNTU]
4534926
4534850
-
Met
CAT
[ENA]
¡û
>W1710542181
FNYY01000008
Alphaproteobacteria
Marinovum algicola [FNYY]
210244
210320
+
Met
CAT
[ENA]
¡û
>W1710542186
FNYY01000012
Alphaproteobacteria
Marinovum algicola [FNYY]
144181
144257
+
Met
CAT
[ENA]
¡û
>W1710599210
FTON01000024
Alphaproteobacteria
Thalassospira xiamenensis M-5 = DSM 17429 [FTON]
187
263
+
Met
CAT
[ENA]
¡û
>W1710606274
FWXR01000004
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
192163
192239
+
Met
CAT
[ENA]
¡û
>W1710624609
JOPB01000023
Alphaproteobacteria
Commensalibacter intestini [JOPB]
92740
92816
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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