This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17584 (136 seq.)
>W1711069055
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
1591
1680
+
Ser
GCT
[ENA]
¡û
>W1711766945
MUZD01000002
Bacillota
Sedimentibacter sp. SX930 [MUZD]
246
335
+
Ser
GCT
[ENA]
¡û
>W1711767004
MUZD01000021
Bacillota
Sedimentibacter sp. SX930 [MUZD]
642
555
-
Ser
GCT
[ENA]
¡û
>W1711767024
MUZD01000028
Bacillota
Sedimentibacter sp. SX930 [MUZD]
16
103
+
Ser
GCT
[ENA]
¡û
>C171015398
CP012047
Bacillota
Tetragenococcus halophilus MJ4 [CP012047]
2266138
2266049
-
Ser
GCT
-
¡û
>WENV180284098
OBID01015203
[OBID] metagenome; sludge
404
317
-
Ser
GCT
[ENA]
¢þ
>WENV180311528
OBJT01355549
[OBJT] soil metagenome; soil
165
78
-
Ser
GCT
[ENA]
¢þ
>W141054558
AODL01000054
Bacillota
Listeria riparia FSL S10-1204 [AODL]
2110
2200
+
Ser
GCT
[ENA]
¡û
>W08004230
ABHH01000037
Bacillota
Carnobacterium sp. AT7 [ABHH]
15676
15587
-
Ser
GCT
[ENA]
¡û
>W141426025
JEMH01000011
Bacillota
Carnobacterium jeotgali [JEMH]
6726
6637
-
Ser
GCT
[ENA]
¡û
>WENV170971967
MTKX01016631
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
36
125
+
Ser
GCT
[ENA]
¢þ
>WENV170979298
MTKZ01084004
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1469
1556
+
Ser
GCT
[ENA]
¢þ
>C181042751
CP020017
Bacillota
Tetragenococcus halophilus KUD23 [CP020017]
2443628
2443717
+
Ser
GCT
-
¡û
>C191012715
CP016843
Bacillota
Carnobacterium divergens TMW 2.1579 [CP016843]
2202491
2202402
-
Ser
GCT
-
¡û
>C191012722
CP016843
Bacillota
Carnobacterium divergens TMW 2.1579 [CP016843]
2201759
2201670
-
Ser
GCT
-
¡û
>C191055658
CP027768
Bacillota
Tetragenococcus halophilus LMG 26042 [CP027768]
222183
222094
-
Ser
GCT
-
¡û
>C191055807
CP027786
Bacillota
Tetragenococcus koreensis KCTC 3924 [CP027786]
1791330
1791241
-
Ser
GCT
-
¡û
>W141815500
JQIV01000006
Bacillota
Carnobacterium inhibens DSM 13024 [JQIV]
2262390
2262479
+
Ser
GCT
[ENA]
¡û
>W141818089
JQLG01000004
Bacillota
Carnobacterium alterfunditum DSM 5972 [JQLG]
1620202
1620291
+
Ser
GCT
[ENA]
¡û
>W141818548
JQLO01000001
Bacillota
Carnobacterium divergens DSM 20623 [JQLO]
358594
358683
+
Ser
GCT
[ENA]
¡û
>W141818555
JQLO01000001
Bacillota
Carnobacterium divergens DSM 20623 [JQLO]
359327
359416
+
Ser
GCT
[ENA]
¡û
>W141818696
JQLQ01000002
Bacillota
Carnobacterium pleistocenium FTR1 [JQLQ]
2103621
2103532
-
Ser
GCT
[ENA]
¡û
>W141820960
JQNF01000007
Bacillota
Carnobacterium jeotgali MS3 [JQNF]
56178
56089
-
Ser
GCT
[ENA]
¡û
>W141821018
JQNG01000002
Bacillota
Carnobacterium sp. WN1374 [JQNG]
1220956
1221045
+
Ser
GCT
[ENA]
¡û
>W1910007373
BDDY01000135
Bacillota
Tetragenococcus halophilus subsp. halophilus NRIC 0098 [BDDY]
1054
1143
+
Ser
GCT
[ENA]
¡û
>W1910007390
BDDZ01000088
Bacillota
Tetragenococcus halophilus subsp. halophilus 11 [BDDZ]
83
172
+
Ser
GCT
[ENA]
¡û
>W1910007448
BDEA01000079
Bacillota
Tetragenococcus halophilus subsp. flandriensis DSM 23766 [BDEA]
1562
1651
+
Ser
GCT
[ENA]
¡û
>W1910007488
BDEB01000081
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7116 [BDEB]
98
187
+
Ser
GCT
[ENA]
¡û
>W1910007557
BDEC01000183
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7118 [BDEC]
22213
22124
-
Ser
GCT
[ENA]
¡û
>W1910007611
BDED01000071
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7121 [BDED]
873
962
+
Ser
GCT
[ENA]
¡û
>W1910007653
BDEE01000032
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7125 [BDEE]
796
885
+
Ser
GCT
[ENA]
¡û
>W1910007725
BDEF01000203
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7126 [BDEF]
24748
24659
-
Ser
GCT
[ENA]
¡û
>W1910007740
BDEG01000031
Bacillota
Tetragenococcus halophilus subsp. halophilus NISL 7128 [BDEG]
98
187
+
Ser
GCT
[ENA]
¡û
>W1910007807
BDEH01000044
Bacillota
Tetragenococcus halophilus subsp. halophilus D10 [BDEH]
2642
2553
-
Ser
GCT
[ENA]
¡û
>W1910007857
BDEI01000059
Bacillota
Tetragenococcus halophilus subsp. halophilus D-86 [BDEI]
520
609
+
Ser
GCT
[ENA]
¡û
>W1910378014
FUKW01000009
Bacillota
Marinilactibacillus psychrotolerans 42ea [FUKW]
1057
1146
+
Ser
GCT
[ENA]
¡û
>W1910442037
FWEY01000012
Bacillota
Trichococcus pasteurii [FWEY]
462
551
+
Ser
GCT
[ENA]
¡û
>C141008746
CP006812
Bacillota
Carnobacterium inhibens subsp. gilichinskyi WN1359 [CP006812]
468626
468715
+
Ser
GCT
[Ensembl]
¡û
>W1911146433
NPDE01000080
Bacillota
Paenibacillus sp. 7884-2 [NPDE]
117881
117791
-
Ser
GCT
[ENA]
¡û
>W1911215894
NROR01000008
Bacillota
Carnobacterium divergens C18 [NROR]
16217
16128
-
Ser
GCT
[ENA]
¡û
>W1911215901
NROR01000008
Bacillota
Carnobacterium divergens C18 [NROR]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911215939
NROS01000008
Bacillota
Carnobacterium divergens C17 [NROS]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911215952
NROS01000018
Bacillota
Carnobacterium divergens C17 [NROS]
1120
1209
+
Ser
GCT
[ENA]
¡û
>W1911215997
NROT01000006
Bacillota
Carnobacterium divergens C16 [NROT]
17161
17072
-
Ser
GCT
[ENA]
¡û
>W1911216004
NROT01000006
Bacillota
Carnobacterium divergens C16 [NROT]
16434
16345
-
Ser
GCT
[ENA]
¡û
>W1911216050
NROU01000014
Bacillota
Carnobacterium divergens C15 [NROU]
1120
1209
+
Ser
GCT
[ENA]
¡û
>W1911216057
NROU01000014
Bacillota
Carnobacterium divergens C15 [NROU]
1852
1941
+
Ser
GCT
[ENA]
¡û
>W1911216101
NROV01000005
Bacillota
Carnobacterium divergens C14 [NROV]
39420
39331
-
Ser
GCT
[ENA]
¡û
>W1911216147
NROW01000004
Bacillota
Carnobacterium divergens C13 [NROW]
16703
16614
-
Ser
GCT
[ENA]
¡û
>W1911216186
NROX01000007
Bacillota
Carnobacterium divergens C12 [NROX]
382
471
+
Ser
GCT
[ENA]
¡û
>W1911216193
NROX01000007
Bacillota
Carnobacterium divergens C12 [NROX]
1114
1203
+
Ser
GCT
[ENA]
¡û
>W1911216238
NROY01000008
Bacillota
Carnobacterium divergens C11 [NROY]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911216276
NROZ01000005
Bacillota
Carnobacterium divergens C10 [NROZ]
40147
40058
-
Ser
GCT
[ENA]
¡û
>W1911216283
NROZ01000005
Bacillota
Carnobacterium divergens C10 [NROZ]
39414
39325
-
Ser
GCT
[ENA]
¡û
>W1911216321
NRPA01000007
Bacillota
Carnobacterium divergens C9 [NRPA]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911216367
NRPB01000015
Bacillota
Carnobacterium divergens C8 [NRPB]
1120
1209
+
Ser
GCT
[ENA]
¡û
>W1911216405
NRPC01000005
Bacillota
Carnobacterium divergens C7 [NRPC]
39414
39325
-
Ser
GCT
[ENA]
¡û
>W1911216418
NRPC01000009
Bacillota
Carnobacterium divergens C7 [NRPC]
1028
1117
+
Ser
GCT
[ENA]
¡û
>W1911216463
NRPD01000006
Bacillota
Carnobacterium divergens C6 [NRPD]
17161
17072
-
Ser
GCT
[ENA]
¡û
>W1911216470
NRPD01000006
Bacillota
Carnobacterium divergens C6 [NRPD]
16434
16345
-
Ser
GCT
[ENA]
¡û
>W1911216508
NRPE01000005
Bacillota
Carnobacterium divergens C5 [NRPE]
39414
39325
-
Ser
GCT
[ENA]
¡û
>W1911216554
NRPF01000008
Bacillota
Carnobacterium divergens C4 [NRPF]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911216597
NRPG01000008
Bacillota
Carnobacterium divergens C3 [NRPG]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911216643
NRPH01000008
Bacillota
Carnobacterium divergens C2 [NRPH]
16217
16128
-
Ser
GCT
[ENA]
¡û
>W1911216650
NRPH01000008
Bacillota
Carnobacterium divergens C2 [NRPH]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911216696
NRPI01000008
Bacillota
Carnobacterium divergens C1 [NRPI]
16217
16128
-
Ser
GCT
[ENA]
¡û
>W1911216703
NRPI01000008
Bacillota
Carnobacterium divergens C1 [NRPI]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911216747
NRPJ01000006
Bacillota
Carnobacterium divergens B8 [NRPJ]
17161
17072
-
Ser
GCT
[ENA]
¡û
>W1911216754
NRPJ01000006
Bacillota
Carnobacterium divergens B8 [NRPJ]
16434
16345
-
Ser
GCT
[ENA]
¡û
>W1911216799
NRPK01000006
Bacillota
Carnobacterium divergens B7 [NRPK]
16427
16338
-
Ser
GCT
[ENA]
¡û
>W1911216850
NRPL01000004
Bacillota
Carnobacterium divergens B6 [NRPL]
39803
39714
-
Ser
GCT
[ENA]
¡û
>W1911216889
NRPM01000013
Bacillota
Carnobacterium divergens B5 [NRPM]
1120
1209
+
Ser
GCT
[ENA]
¡û
>W1911216896
NRPM01000013
Bacillota
Carnobacterium divergens B5 [NRPM]
1852
1941
+
Ser
GCT
[ENA]
¡û
>W1911216935
NRPN01000007
Bacillota
Carnobacterium divergens B4 [NRPN]
382
471
+
Ser
GCT
[ENA]
¡û
>W1911216942
NRPN01000007
Bacillota
Carnobacterium divergens B4 [NRPN]
1114
1203
+
Ser
GCT
[ENA]
¡û
>W1911216988
NRPO01000008
Bacillota
Carnobacterium divergens B3 [NRPO]
15485
15396
-
Ser
GCT
[ENA]
¡û
>W1911217032
NRPP01000005
Bacillota
Carnobacterium divergens B2 [NRPP]
39414
39325
-
Ser
GCT
[ENA]
¡û
>W1911217071
NRPQ01000005
Bacillota
Carnobacterium divergens B1 [NRPQ]
40147
40058
-
Ser
GCT
[ENA]
¡û
>W1911217078
NRPQ01000005
Bacillota
Carnobacterium divergens B1 [NRPQ]
39414
39325
-
Ser
GCT
[ENA]
¡û
>W1911217371
NRPW01000005
Bacillota
Carnobacterium divergens A13 [NRPW]
16270
16181
-
Ser
GCT
[ENA]
¡û
>W1911217416
NRPX01000005
Bacillota
Carnobacterium divergens A12 [NRPX]
295
206
-
Ser
GCT
[ENA]
¡û
>W1911217484
NRPY01000010
Bacillota
Carnobacterium divergens A11 [NRPY]
739973
739884
-
Ser
GCT
[ENA]
¡û
>W1911217491
NRPY01000010
Bacillota
Carnobacterium divergens A11 [NRPY]
739240
739151
-
Ser
GCT
[ENA]
¡û
>W1911217536
NRPZ01000009
Bacillota
Carnobacterium divergens A10 [NRPZ]
739763
739674
-
Ser
GCT
[ENA]
¡û
>W1911217543
NRPZ01000009
Bacillota
Carnobacterium divergens A10 [NRPZ]
739030
738941
-
Ser
GCT
[ENA]
¡û
>W1911217558
NRQA01000005
Bacillota
Carnobacterium divergens A9 [NRQA]
16270
16181
-
Ser
GCT
[ENA]
¡û
>W1911217602
NRQB01000004
Bacillota
Carnobacterium divergens A8 [NRQB]
17001
16912
-
Ser
GCT
[ENA]
¡û
>W1911217609
NRQB01000004
Bacillota
Carnobacterium divergens A8 [NRQB]
16270
16181
-
Ser
GCT
[ENA]
¡û
>W1911217804
NRQF01000004
Bacillota
Carnobacterium divergens A4 [NRQF]
16480
16391
-
Ser
GCT
[ENA]
¡û
>W1911217907
NRQH01000004
Bacillota
Carnobacterium divergens A2 [NRQH]
17001
16912
-
Ser
GCT
[ENA]
¡û
>W1911217914
NRQH01000004
Bacillota
Carnobacterium divergens A2 [NRQH]
16270
16181
-
Ser
GCT
[ENA]
¡û
>W1911532434
OGVA01000017
Bacillota
Carnobacterium divergens MFPA43A1505 [OGVA]
16433
16344
-
Ser
GCT
[ENA]
¡û
>W1911593468
PKOT01000087
Bacillota
Tetragenococcus halophilus R44 [PKOT]
2549
2460
-
Ser
GCT
[ENA]
¡û
>W1911593476
PKOU01000007
Bacillota
Tetragenococcus halophilus R23 [PKOU]
61656
61567
-
Ser
GCT
[ENA]
¡û
>W1911640692
PXYA01000002
Bacillota
Tetragenococcus halophilus subsp. halophilus DSM 20339 [PXYA]
716547
716636
+
Ser
GCT
[ENA]
¡û
>W1810364855
PVTO01000024
Bacillota
Alkalibacterium olivapovliticus DSM 13175 [PVTO]
37971
37882
-
Ser
GCT
[ENA]
¡û
>W1511221084
JNFA01000029
Bacillota
Listeria booriae FSL A5-0281 [JNFA]
2070
2160
+
Ser
GCT
[ENA]
¡û
>C121000386
AP012046
Bacillota
Tetragenococcus halophilus NBRC 12172 [AP012046]
2439584
2439495
-
Ser
GCT
[Ensembl]
¡û
>W1610066746
BCPY01000013
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
25
114
+
Ser
GCT
[ENA]
¡û
>W1610434085
FJMZ01000023
Bacillota
Trichococcus flocculiformis [FJMZ]
36183
36094
-
Ser
GCT
[ENA]
¡û
>W1610434117
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
2781
2692
-
Ser
GCT
[ENA]
¡û
>W1610434149
FJMZ01000082
Bacillota
Trichococcus flocculiformis [FJMZ]
325
238
-
Ser
GCT
[ENA]
¡û
>W1610434166
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
726109
726196
+
Ser
GCT
[ENA]
¡û
>W1610434210
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
1027004
1026915
-
Ser
GCT
[ENA]
¡û
>W1610434270
FJNB01000010
Bacillota
Trichococcus ilyis R210 [FJNB]
103353
103264
-
Ser
GCT
[ENA]
¡û
>W1610434305
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
6154
6243
+
Ser
GCT
[ENA]
¡û
>W1610434369
FJND01000044
Bacillota
Trichococcus sp. ES5 [FJND]
5059
4972
-
Ser
GCT
[ENA]
¡û
>W1610434388
FJND01000050
Bacillota
Trichococcus sp. ES5 [FJND]
2017
1928
-
Ser
GCT
[ENA]
¡û
>W1610434410
FJNE01000002
Bacillota
Trichococcus palustris [FJNE]
505486
505397
-
Ser
GCT
[ENA]
¡û
>W1610502835
FLLU01000015
Bacillota
Carnobacterium divergens [FLLU]
183
94
-
Ser
GCT
[ENA]
¡û
>W1610502840
FLLU01000022
Bacillota
Carnobacterium divergens [FLLU]
243
332
+
Ser
GCT
[ENA]
¡û
>W1610528973
JQBS01000012
Bacillota
Carnobacterium divergens DSM 20623 [JQBS]
182
93
-
Ser
GCT
[ENA]
¡û
>W1610909625
LSFG01000041
Bacillota
Tetragenococcus halophilus [LSFG]
1591
1680
+
Ser
GCT
[ENA]
¡û
>W1710064084
BCPY01000013
Bacillota
Tetragenococcus solitarius NBRC 100494 [BCPY]
25
114
+
Ser
GCT
[ENA]
¡û
>W1710433821
FJMZ01000023
Bacillota
Trichococcus flocculiformis [FJMZ]
36183
36094
-
Ser
GCT
[ENA]
¡û
>W1710433853
FJMZ01000070
Bacillota
Trichococcus flocculiformis [FJMZ]
2781
2692
-
Ser
GCT
[ENA]
¡û
>W1710433885
FJMZ01000082
Bacillota
Trichococcus flocculiformis [FJMZ]
325
238
-
Ser
GCT
[ENA]
¡û
>W1710433902
FJNA01000001
Bacillota
Trichococcus collinsii [FJNA]
726109
726196
+
Ser
GCT
[ENA]
¡û
>W1710433946
FJNA01000002
Bacillota
Trichococcus collinsii [FJNA]
1027004
1026915
-
Ser
GCT
[ENA]
¡û
>W1710434006
FJNB01000010
Bacillota
Trichococcus ilyis R210 [FJNB]
103353
103264
-
Ser
GCT
[ENA]
¡û
>W1710434041
FJNB01000029
Bacillota
Trichococcus ilyis R210 [FJNB]
6154
6243
+
Ser
GCT
[ENA]
¡û
>W1710434105
FJND01000044
Bacillota
Trichococcus sp. ES5 [FJND]
5059
4972
-
Ser
GCT
[ENA]
¡û
>W1710434124
FJND01000050
Bacillota
Trichococcus sp. ES5 [FJND]
2017
1928
-
Ser
GCT
[ENA]
¡û
>W1710434146
FJNE01000002
Bacillota
Trichococcus palustris [FJNE]
505486
505397
-
Ser
GCT
[ENA]
¡û
>W1710496234
FLLU01000015
Bacillota
Carnobacterium divergens [FLLU]
183
94
-
Ser
GCT
[ENA]
¡û
>W1710496239
FLLU01000022
Bacillota
Carnobacterium divergens [FLLU]
243
332
+
Ser
GCT
[ENA]
¡û
>W1710512107
FMZD01000042
Bacillota
Marinilactibacillus psychrotolerans [FMZD]
425
514
+
Ser
GCT
[ENA]
¡û
>W1710532397
FNQH01000001
Bacillota
Trichococcus collinsii [FNQH]
863067
862980
-
Ser
GCT
[ENA]
¡û
>W1710543801
FOAH01000051
Bacillota
Carnobacterium iners [FOAH]
6726
6637
-
Ser
GCT
[ENA]
¡û
>W1710543810
FOAH01000051
Bacillota
Carnobacterium iners [FOAH]
5804
5715
-
Ser
GCT
[ENA]
¡û
>W1710552718
FOHA01000015
Bacillota
Isobaculum melis [FOHA]
1914
2003
+
Ser
GCT
[ENA]
¡û
>W1710560548
FONM01000002
Bacillota
Trichococcus pasteurii [FONM]
238
325
+
Ser
GCT
[ENA]
¡û
>W1710563944
FOQC01000037
Bacillota
Trichococcus flocculiformis [FOQC]
24338
24249
-
Ser
GCT
[ENA]
¡û
>W1710594887
FSRN01000001
Bacillota
Carnobacterium alterfunditum [FSRN]
962761
962850
+
Ser
GCT
[ENA]
¡û
>W1710608782
FXBJ01000002
Bacillota
Carnobacterium iners [FXBJ]
55640
55551
-
Ser
GCT
[ENA]
¡û
>W1710630563
JQBS01000012
Bacillota
Carnobacterium divergens DSM 20623 [JQBS]
182
93
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK