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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17589 (12 seq.)
>C171057437
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
112013
112103
+
Ser
GCT
-
¡û
>W131169175
AREO01000002
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
121285
121375
+
Ser
GCT
[ENA]
¡û
>WENV170689137
LFRM01278805
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1881
1971
+
Ser
GCT
[ENA]
¢þ
>C181185401
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1240308
1240398
+
Ser
GCT
-
¡û
>C191108257
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
608488
608398
-
Ser
GCT
-
¡û
>C191122101
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
843868
843778
-
Ser
GCT
-
¡û
>C191211068
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
637356
637266
-
Ser
GCT
-
¡û
>W09128024
ACLK01000029
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
102523
102433
-
Ser
GCT
[ENA]
¡û
>C151007153
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
740461
740551
+
Ser
GCT
[Ensembl]
¡û
>C11108863
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1251051
1251141
+
Ser
GCT
[Ensembl]
¡û
>C161053134
CP013213
Bacillota
Erysipelothrix larvae LV19 [CP013213]
732222
732132
-
Ser
GCT
[Ensembl]
¡û
>C161078661
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
692832
692742
-
Ser
GCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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