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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175973 (19 seq.)
>W131104561
APCS01000001
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
72170
72246
+
His
GTG
[ENA]
¡û
>C007965
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
936961
936885
-
His
GTG
[Ensembl]
¡û
>WENV180232177
OBCO01000166
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
87566
87490
-
His
GTG
[ENA]
¢þ
>WENV180233491
OBCP01000657
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
1641
1565
-
His
GTG
[ENA]
¢þ
>WENV180569856
OCLR01000605
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
4728
4652
-
His
GTG
[ENA]
¢þ
>WENV180570803
OCLS01000613
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
4748
4672
-
His
GTG
[ENA]
¢þ
>WENV180571547
OCLT01000163
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
87566
87490
-
His
GTG
[ENA]
¢þ
>WENV180573770
OCLW01000157
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
87566
87490
-
His
GTG
[ENA]
¢þ
>WENV180639840
OCRL01000158
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
87566
87490
-
His
GTG
[ENA]
¢þ
>WENV180640769
OCRM01000161
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
87566
87490
-
His
GTG
[ENA]
¢þ
>W141154757
AXLL01000006
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
25475
25399
-
His
GTG
[ENA]
¡û
>C181196457
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1360517
1360593
+
His
GTG
-
¡û
>W141561452
JHYL01000002
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
272731
272807
+
His
GTG
[ENA]
¡û
>W141702065
JMLF01000010
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
36111
36187
+
His
GTG
[ENA]
¡û
>C10105367
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
936961
936885
-
His
GTG
[Ensembl]
¡û
>C11107235
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1920260
1920184
-
His
GTG
[Ensembl]
¡û
>C11107294
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
936961
936885
-
His
GTG
[Ensembl]
¡û
>C161082969
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
1790602
1790678
+
His
GTG
-
¡û
>W1710542266
FNZA01000005
Deinococcota
Deinococcus reticulitermitis [FNZA]
187510
187434
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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