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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175978 (37 seq.)
>C171046556
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
10443112
10443036
-
Arg
TCG
-
¡û
>WENV180015890
FSTQ01000080
[FSTQ] metagenome; soil
13043
12968
-
Arg
TCG
[ENA]
¡û
>WENV180019775
FTCO01000078
[FTCO] metagenome; soil
13282
13358
+
Arg
TCG
[ENA]
¡û
>WENV180027929
FTIZ01290425
[FTIZ] metagenome; soil
528
452
-
Arg
TCG
[ENA]
¡û
>WENV180028962
FTJI01000310
[FTJI] metagenome; soil
3144
3219
+
Arg
TCG
[ENA]
¡û
>WENV180034487
FTKR01000306
[FTKR] metagenome; soil
3144
3219
+
Arg
TCG
[ENA]
¡û
>WENV180695081
OCZS013006387
[OCZS] soil metagenome; soil
154
79
-
Arg
TCG
[ENA]
¡û
>W141073094
ASRX01000015
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
92744
92820
+
Arg
TCG
[ENA]
¡û
>C08008929
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
11288793
11288717
-
Arg
TCG
[Ensembl]
¡û
>C181012494
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
13349645
13349720
+
Arg
TCG
-
¡û
>C191010026
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
9834421
9834346
-
Arg
TCG
-
¡û
>C191010079
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
13050833
13050758
-
Arg
TCG
-
¡û
>C151091953
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
861143
861219
+
Arg
TCG
-
¡û
>W2011690816
SSMQ01000058
Myxococcota
Polyangium fumosum DSM 14668 [SSMQ]
53917
53992
+
Arg
TCG
[ENA]
¡û
>W2011690857
SSMR01000005
Myxococcota
Polyangium sp. SDU3-1 [SSMR]
348856
348931
+
Arg
TCG
[ENA]
¡û
>W2012351022
WJIE01000006
Myxococcota
Polyangium spumosum DSM 14734 [WJIE]
73389
73314
-
Arg
TCG
[ENA]
¡û
>C231161588
CP079217
Myxococcota
Polyangium aurulentum SDU3-1 [CP079217]
3657268
3657343
+
Arg
TCG
-
¡û
>C231448182
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
13007259
13007184
-
Arg
TCG
-
¡û
>W1610048971
BBEO01001777
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
665
741
+
Arg
TCG
[ENA]
¡û
>C131010763
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
13280266
13280190
-
Arg
TCG
[Ensembl]
¡û
>W1610520371
JELX01000478
Myxococcota
Sorangium cellulosum [JELX]
219
295
+
Arg
TCG
[ENA]
¡û
>W1610520440
JELY01002094
Myxococcota
Sorangium cellulosum [JELY]
7634
7558
-
Arg
TCG
[ENA]
¡û
>W1610520472
JELZ01000554
Myxococcota
Sorangium cellulosum [JELZ]
4990
4914
-
Arg
TCG
[ENA]
¡û
>W1610520535
JEMA01000738
Myxococcota
Sorangium cellulosum [JEMA]
1275
1351
+
Arg
TCG
[ENA]
¡û
>W1610520568
JEMB01001264
Myxococcota
Sorangium cellulosum [JEMB]
157
233
+
Arg
TCG
[ENA]
¡û
>W1610520651
JEMC01003348
Myxococcota
Sorangium cellulosum [JEMC]
196
272
+
Arg
TCG
[ENA]
¡û
>W1610520675
JEMD01001435
Myxococcota
Sorangium cellulosum [JEMD]
393
469
+
Arg
TCG
[ENA]
¡û
>W1610520716
JEME01000757
Myxococcota
Sorangium cellulosum [JEME]
1488
1412
-
Arg
TCG
[ENA]
¡û
>W1710045443
BBEO01001777
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
665
741
+
Arg
TCG
[ENA]
¡û
>W1710615849
JELX01000478
Myxococcota
Sorangium cellulosum [JELX]
219
295
+
Arg
TCG
[ENA]
¡û
>W1710615918
JELY01002094
Myxococcota
Sorangium cellulosum [JELY]
7634
7558
-
Arg
TCG
[ENA]
¡û
>W1710615950
JELZ01000554
Myxococcota
Sorangium cellulosum [JELZ]
4990
4914
-
Arg
TCG
[ENA]
¡û
>W1710616013
JEMA01000738
Myxococcota
Sorangium cellulosum [JEMA]
1275
1351
+
Arg
TCG
[ENA]
¡û
>W1710616046
JEMB01001264
Myxococcota
Sorangium cellulosum [JEMB]
157
233
+
Arg
TCG
[ENA]
¡û
>W1710616129
JEMC01003348
Myxococcota
Sorangium cellulosum [JEMC]
196
272
+
Arg
TCG
[ENA]
¡û
>W1710616153
JEMD01001435
Myxococcota
Sorangium cellulosum [JEMD]
393
469
+
Arg
TCG
[ENA]
¡û
>W1710616194
JEME01000757
Myxococcota
Sorangium cellulosum [JEME]
1488
1412
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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