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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175982 (32 seq.)
>C171046560
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
2612695
2612621
-
Met
CAT
-
¡û
>WENV180019794
FTCO01000705
[FTCO] metagenome; soil
4670
4595
-
Met
CAT
[ENA]
¡û
>WENV180029104
FTJI01037018
[FTJI] metagenome; soil
706
779
+
Met
CAT
[ENA]
¡û
>WENV180034624
FTKR01036897
[FTKR] metagenome; soil
706
779
+
Met
CAT
[ENA]
¡û
>W141073087
ASRX01000006
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
165555
165479
-
Met
CAT
[ENA]
¡û
>C08008949
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
5262971
5262898
-
Met
CAT
[Ensembl]
¡û
>C181012518
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
6200090
6200014
-
Met
CAT
-
¡û
>C191010038
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
4602442
4602366
-
Met
CAT
-
¡û
>C191010098
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
6467677
6467601
-
Met
CAT
-
¡û
>C151092016
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
6794276
6794200
-
Met
CAT
-
¡û
>W2011690775
SSMQ01000015
Myxococcota
Polyangium fumosum DSM 14668 [SSMQ]
66209
66133
-
Met
CAT
[ENA]
¡û
>W2011690836
SSMR01000001
Myxococcota
Polyangium sp. SDU3-1 [SSMR]
1462652
1462728
+
Met
CAT
[ENA]
¡û
>W2012350989
WJIE01000001
Myxococcota
Polyangium spumosum DSM 14734 [WJIE]
624132
624056
-
Met
CAT
[ENA]
¡û
>C231161607
CP079217
Myxococcota
Polyangium aurulentum SDU3-1 [CP079217]
8383628
8383704
+
Met
CAT
-
¡û
>C231448201
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
6467871
6467795
-
Met
CAT
-
¡û
>C131010786
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
6403105
6403029
-
Met
CAT
[Ensembl]
¡û
>W1610520409
JELX01004165
Myxococcota
Sorangium cellulosum [JELX]
437
513
+
Met
CAT
[ENA]
¡û
>W1610520415
JELY01000338
Myxococcota
Sorangium cellulosum [JELY]
424
500
+
Met
CAT
[ENA]
¡û
>W1610520468
JELZ01000462
Myxococcota
Sorangium cellulosum [JELZ]
1696
1620
-
Met
CAT
[ENA]
¡û
>W1610520556
JEMA01001235
Myxococcota
Sorangium cellulosum [JEMA]
4153
4077
-
Met
CAT
[ENA]
¡û
>W1610520580
JEMB01001992
Myxococcota
Sorangium cellulosum [JEMB]
439
515
+
Met
CAT
[ENA]
¡û
>W1610520618
JEMC01001383
Myxococcota
Sorangium cellulosum [JEMC]
1459
1383
-
Met
CAT
[ENA]
¡û
>W1610520701
JEMD01002121
Myxococcota
Sorangium cellulosum [JEMD]
781
857
+
Met
CAT
[ENA]
¡û
>W1610520748
JEME01002438
Myxococcota
Sorangium cellulosum [JEME]
3430
3354
-
Met
CAT
[ENA]
¡û
>W1710615887
JELX01004165
Myxococcota
Sorangium cellulosum [JELX]
437
513
+
Met
CAT
[ENA]
¡û
>W1710615893
JELY01000338
Myxococcota
Sorangium cellulosum [JELY]
424
500
+
Met
CAT
[ENA]
¡û
>W1710615946
JELZ01000462
Myxococcota
Sorangium cellulosum [JELZ]
1696
1620
-
Met
CAT
[ENA]
¡û
>W1710616034
JEMA01001235
Myxococcota
Sorangium cellulosum [JEMA]
4153
4077
-
Met
CAT
[ENA]
¡û
>W1710616058
JEMB01001992
Myxococcota
Sorangium cellulosum [JEMB]
439
515
+
Met
CAT
[ENA]
¡û
>W1710616096
JEMC01001383
Myxococcota
Sorangium cellulosum [JEMC]
1459
1383
-
Met
CAT
[ENA]
¡û
>W1710616179
JEMD01002121
Myxococcota
Sorangium cellulosum [JEMD]
781
857
+
Met
CAT
[ENA]
¡û
>W1710616226
JEME01002438
Myxococcota
Sorangium cellulosum [JEME]
3430
3354
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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