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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175987 (18 seq.)
>WENV170678987
LDZU01006190
[LDZU] terrestrial metagenome; oil reservoir sample SB2
18043
17967
-
Asp
GTC
[ENA]
¡û
>W09113927
ABZD01000006
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
131456
131380
-
Asp
GTC
[ENA]
¡û
>W1910002925
AUPM01000031
Thermotogota
Petrotoga sp. 9PW.55.5.1 [AUPM]
65905
65829
-
Asp
GTC
[ENA]
¡û
>C09106795
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
1220932
1221008
+
Asp
GTC
[Ensembl]
¡û
>W1810595998
QGGI01000002
Thermotogota
Oceanotoga teriensis DSM 24906 [QGGI]
74395
74319
-
Asp
GTC
[ENA]
¡û
>W1810596003
QGGI01000003
Thermotogota
Oceanotoga teriensis DSM 24906 [QGGI]
57986
57910
-
Asp
GTC
[ENA]
¡û
>C151078482
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
1038263
1038187
-
Asp
GTC
[Ensembl]
¡û
>W2010072652
AUPM01000031
Thermotogota
Petrotoga sp. 9PW.55.5.1 [AUPM]
65905
65829
-
Asp
GTC
[ENA]
¡û
>W2011679388
SRME01000001
Thermotogota
Geotoga petraea HO-Geo1 [SRME]
755775
755699
-
Asp
GTC
[ENA]
¡û
>W2011679408
SRME01000004
Thermotogota
Geotoga petraea HO-Geo1 [SRME]
88259
88183
-
Asp
GTC
[ENA]
¡û
>C231516317
CP107547
Thermotogota
Oceanotoga sp. DSM 15011 [CP107547]
849165
849241
+
Asp
GTC
-
¡û
>C231516344
CP107547
Thermotogota
Oceanotoga sp. DSM 15011 [CP107547]
2717271
2717195
-
Asp
GTC
-
¡û
>W1610520909
JFHK01000005
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
82632
82708
+
Asp
GTC
[ENA]
¡û
>W1610520952
JGCK01000044
Thermotogota
Kosmotoga sp. DU53 [JGCK]
8847
8923
+
Asp
GTC
[ENA]
¡û
>W1710511669
FMYV01000004
Thermotogota
Geotoga petraea [FMYV]
160990
161066
+
Asp
GTC
[ENA]
¡û
>W1710511688
FMYV01000012
Thermotogota
Geotoga petraea [FMYV]
25727
25803
+
Asp
GTC
[ENA]
¡û
>W1710616443
JFHK01000005
Thermotogota
Kosmotoga arenicorallina S304 [JFHK]
82632
82708
+
Asp
GTC
[ENA]
¡û
>W1710617202
JGCK01000044
Thermotogota
Kosmotoga sp. DU53 [JGCK]
8847
8923
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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