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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176009 (29 seq.)
>W131167576
ARDJ01000019
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
392
316
-
Val
CAC
[ENA]
¡û
>W131218765
ATXZ01000014
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
121927
122001
+
Val
CAC
[ENA]
¡û
>w010201
AAKQ01000056
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
595
517
-
Val
CAC
[ENA]
¡û
>w000611
AATV01000090
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
73
0
-
Val
CAC
[ENA]
¡û
>WENV181226195
OFDK01000195
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
16988
16912
-
Val
CAC
[ENA]
¢þ
>W141193981
AYSN01000059
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
10654
10578
-
Val
CAC
[ENA]
¡û
>C08010969
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2080836
2080763
-
Val
CAC
[Ensembl]
¡û
>C08011048
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
803928
804004
+
Val
CAC
[Ensembl]
¡û
>WENV170675559
LDZP01000010
[LDZP] terrestrial metagenome; oil reservoir sample I1
668
592
-
Val
CAC
[ENA]
¢þ
>W09133557
ACPF01000107
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
2460
2384
-
Val
CAC
[ENA]
¡û
>W09134108
ACQZ01000001
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
51011
50935
-
Val
CAC
[ENA]
¡û
>W09135857
ACXP01000016
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
42703
42627
-
Val
CAC
[ENA]
¡û
>C191108133
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2224363
2224287
-
Val
CAC
-
¡û
>C151045326
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1540898
1540822
-
Val
CAC
[Ensembl]
¡û
>W10105919
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
25344
25420
+
Val
CAC
[ENA]
¡û
>W11108242
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
25344
25420
+
Val
CAC
[ENA]
¡û
>W1511275089
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
933242
933166
-
Val
CAC
[ENA]
¡û
>C11122475
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
796122
796198
+
Val
CAC
[Ensembl]
¡û
>C11122708
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
873508
873584
+
Val
CAC
[Ensembl]
¡û
>C11123262
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1672911
1672835
-
Val
CAC
[Ensembl]
¡û
>W11152658
AEYS01000013
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
32396
32320
-
Val
CAC
[ENA]
¡û
>C121007641
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2520763
2520687
-
Val
CAC
[Ensembl]
¡û
>W121068104
AJUD01000009
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
67009
67085
+
Val
CAC
[ENA]
¡û
>W1610613178
LGFN01000100
Bacillota
Caldanaerobacter subterraneus [LGFN]
2279
2203
-
Val
CAC
[ENA]
¡û
>W1710515349
FNBS01000143
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
163
239
+
Val
CAC
[ENA]
¡û
>W1710560370
FONI01000019
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
24287
24363
+
Val
CAC
[ENA]
¡û
>W1710583301
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
65386
65462
+
Val
CAC
[ENA]
¡û
>W1710584086
FQVH01000011
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
43357
43432
+
Val
CAC
[ENA]
¡û
>W1710734385
LGFN01000100
Bacillota
Caldanaerobacter subterraneus [LGFN]
2279
2203
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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