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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176111 (40 seq.)
>W1710872011
LMLR01000001
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
24027
24103
+
Thr
TGT
[ENA]
¡û
>W1710872184
LMLU01000005
Actinomycetota
Arthrobacter sp. Leaf234 [LMLU]
9093
9169
+
Thr
TGT
[ENA]
¡û
>W1710875501
LMOL01000004
Actinomycetota
Arthrobacter sp. Leaf141 [LMOL]
11705
11781
+
Thr
TGT
[ENA]
¡û
>W1710880325
LMSG01000019
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
11753
11829
+
Thr
TGT
[ENA]
¡û
>W1710916089
LNUT01000004
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
258015
258091
+
Thr
TGT
[ENA]
¡û
>W1710995751
LQAP01000009
Actinomycetota
Arthrobacter sp. B6 [LQAP]
73968
73892
-
Thr
TGT
[ENA]
¡û
>W131172203
ARGT01000011
Actinomycetota
Arthrobacter sp. 131MFCol6.1 [ARGT]
79792
79716
-
Thr
TGT
[ENA]
¡û
>W131237716
AUPJ01000252
Actinomycetota
Arthrobacter sp. TB 26 [AUPJ]
90
14
-
Thr
TGT
[ENA]
¡û
>C171040592
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
2008818
2008894
+
Thr
TGT
-
¡û
>WENV016335
AACY020461368
Marine microbial communities from Global Ocean Sampling (GOS)
1315
1239
-
Thr
TGT
[ENA]
>W141213438
AZRZ01000189
Actinomycetota
Arthrobacter sp. H41 [AZRZ]
16337
16261
-
Thr
TGT
[ENA]
¡û
>W141213493
AZSA01000219
Actinomycetota
Arthrobacter sp. Br18 [AZSA]
13405
13329
-
Thr
TGT
[ENA]
¡û
>W141213545
AZSB01000491
Actinomycetota
Arthrobacter sp. I3 [AZSB]
136
212
+
Thr
TGT
[ENA]
¡û
>W141213546
AZSB01000491
Actinomycetota
Arthrobacter sp. I3 [AZSB]
666
742
+
Thr
TGT
[ENA]
¡û
>W141213598
AZSC01000326
Actinomycetota
Arthrobacter sp. H5 [AZSC]
2668
2592
-
Thr
TGT
[ENA]
¡û
>C181000301
AP014718
Actinomycetota
Arthrobacter sp. Hiyo4 [AP014718]
643171
643247
+
Thr
TGT
-
¡û
>C191164635
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
4130454
4130380
-
Thr
TGT
-
¡û
>C191188269
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
1337542
1337617
+
Thr
TGT
-
¡û
>W141565221
JIBJ01000027
Actinomycetota
Arthrobacter sp. 9MFCol3.1 [JIBJ]
2279
2203
-
Thr
TGT
[ENA]
¡û
>W1911532754
OIVI01000372
Actinomycetota
Arthrobacter alpinus [OIVI]
11696
11772
+
Thr
TGT
[ENA]
¡û
>W1911823675
QZVT01000009
Actinomycetota
Arthrobacter cheniae Hz2 [QZVT]
8345
8419
+
Thr
TGT
[ENA]
¡û
>W1810167906
PJIV01000019
Actinomycetota
Arthrobacter sp. 9E14 [PJIV]
52195
52119
-
Thr
TGT
[ENA]
¡û
>W1810167953
PJIW01000027
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
42054
41978
-
Thr
TGT
[ENA]
¡û
>W1810424180
PYUI01000010
Actinomycetota
Arthrobacter sp. H-02-3 LBUM149 [PYUI]
138577
138501
-
Thr
TGT
[ENA]
¡û
>W1810474984
QAIQ01000671
Actinomycetota
Arthrobacter sp. HMWF013 [QAIQ]
952
876
-
Thr
TGT
[ENA]
¡û
>W1810707067
QMKP01000027
Actinomycetota
Arthrobacter sp. AQ5-06 [QMKP]
11513
11589
+
Thr
TGT
[ENA]
¡û
>W1510018531
BBUE01000017
Actinomycetota
Arthrobacter sp. Hiyo6 [BBUE]
3452
3528
+
Thr
TGT
[ENA]
¡û
>W1511489262
JWSU01000005
Actinomycetota
Arthrobacter sp. L77 [JWSU]
457112
457036
-
Thr
TGT
[ENA]
¡û
>W1511685697
LFQH01000058
Actinomycetota
Arthrobacter sp. ZBG10 [LFQH]
11562
11638
+
Thr
TGT
[ENA]
¡û
>C161060751
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
1469957
1469881
-
Thr
TGT
[Ensembl]
¡û
>W1610734357
LMLR01000001
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
24027
24103
+
Thr
TGT
[ENA]
¡û
>W1610734530
LMLU01000005
Actinomycetota
Arthrobacter sp. Leaf234 [LMLU]
9093
9169
+
Thr
TGT
[ENA]
¡û
>W1610737847
LMOL01000004
Actinomycetota
Arthrobacter sp. Leaf141 [LMOL]
11705
11781
+
Thr
TGT
[ENA]
¡û
>W1610742671
LMSG01000019
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
11753
11829
+
Thr
TGT
[ENA]
¡û
>W1610774328
LNUT01000004
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
258015
258091
+
Thr
TGT
[ENA]
¡û
>W1610850408
LQAP01000009
Actinomycetota
Arthrobacter sp. B6 [LQAP]
73968
73892
-
Thr
TGT
[ENA]
¡û
>W1710521100
FNGC01000018
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
64945
64871
-
Thr
TGT
[ENA]
¡û
>W1710521149
FNGD01000012
Actinomycetota
Arthrobacter sp. ov407 [FNGD]
140361
140285
-
Thr
TGT
[ENA]
¡û
>W1710525661
FNJS01000007
Actinomycetota
Arthrobacter sp. ok909 [FNJS]
18549
18625
+
Thr
TGT
[ENA]
¡û
>W1710603549
FUZD01000034
Actinomycetota
Arthrobacter sp. 49Tsu3.1M3 [FUZD]
12309
12385
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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