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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176134 (23 seq.)
>W1711394671
MEQN01000084
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_58_11 [MEQN]
1924
1848
-
Arg
ACG
[ENA]
¡û
>C171116293
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
1713582
1713658
+
Arg
ACG
-
¡û
>WENV180038449
FZPW01000002
[FZPW] metagenome; underground water
5004
4928
-
Arg
ACG
[ENA]
¡û
>WENV180266052
OBEQ011715589
[OBEQ] groundwater metagenome; groundwater
3024
3100
+
Arg
ACG
[ENA]
¡û
>WENV180326586
OBKS01109792
[OBKS] human gut metagenome; human gut
328
253
-
Arg
ACG
[ENA]
¡û
>WENV181190831
OEPS010004081
[OEPS] soil metagenome; soil
1730
1654
-
Arg
ACG
[ENA]
¡û
>WENV181686865
OGOW01064731
[OGOW] human gut metagenome; faeces
536
461
-
Arg
ACG
[ENA]
¡û
>WENV183694718
ORMF012278890
[ORMF] groundwater metagenome; groundwater
164442
164518
+
Arg
ACG
[ENA]
¡û
>WENV170297565
CESE01215323
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
63
139
+
Arg
ACG
[ENA]
¡û
>WENV170557141
CXWL01019953
[CXWL] groundwater metagenome; biofilm material
3402
3326
-
Arg
ACG
[ENA]
¡û
>WENV170961479
MLJW01000068
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
38034
38110
+
Arg
ACG
[ENA]
¡û
>WENV170961508
MLJW01000100
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
36729
36805
+
Arg
ACG
[ENA]
¡û
>C191004598
AP018738
Betaproteobacteria
Ferriphaselus amnicola OYT1 [AP018738]
1694087
1694011
-
Arg
ACG
-
¡û
>C141000168
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
1068969
1069045
+
Arg
ACG
[Ensembl]
¡û
>W1910698940
MEQR01000185
Betaproteobacteria
Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 [MEQR]
3891
3967
+
Arg
ACG
[ENA]
¡û
>W2010832366
MEQR01000185
Betaproteobacteria
Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 [MEQR]
3891
3967
+
Arg
ACG
[ENA]
¡û
>W1510017303
BBTH01000002
Betaproteobacteria
Ferriphaselus amnicola OYT1 [BBTH]
60234
60158
-
Arg
ACG
[ENA]
¡û
>W1510019299
BBWF01000006
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
37260
37336
+
Arg
ACG
[ENA]
¡û
>C241007174
AP022853
Betaproteobacteria
Sulfurimicrobium lacus skT11 [AP022853]
1829416
1829340
-
Arg
ACG
-
¡û
>C241380711
LR699166
Betaproteobacteria
Sideroxydans sp. CL21 [LR699166]
1980163
1980239
+
Arg
ACG
-
¡û
>W121124644
BAFJ01000006
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
32480
32404
-
Arg
ACG
[ENA]
¡û
>W1610593890
LDUG01000036
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
170250
170174
-
Arg
ACG
[ENA]
¡û
>W1710713365
LDUG01000036
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
170250
170174
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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