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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176271 (49 seq.)
>C171046555
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
11061213
11061137
-
Met
CAT
-
¡û
>WENV180015905
FSTQ01000241
[FSTQ] metagenome; soil
2975
2899
-
fMet
CAT
[ENA]
¢þ
>WENV180019800
FTCO01000942
[FTCO] metagenome; soil
2401
2325
-
fMet
CAT
[ENA]
¢þ
>WENV180019922
FTCS01001680
[FTCS] metagenome; soil
1809
1735
-
fMet
CAT
[ENA]
¢þ
>WENV180027845
FTIZ01160046
[FTIZ] metagenome; soil
426
502
+
fMet
CAT
[ENA]
¢þ
>WENV180028908
FTJH01380474
[FTJH] metagenome; soil
292
366
+
fMet
CAT
[ENA]
¢þ
>WENV180029205
FTJI01176945
[FTJI] metagenome; soil
1429
1353
-
fMet
CAT
[ENA]
¢þ
>WENV180034726
FTKR01172354
[FTKR] metagenome; soil
1429
1353
-
fMet
CAT
[ENA]
¢þ
>WENV180268573
OBEQ011981568
[OBEQ] groundwater metagenome; groundwater
91
17
-
fMet
CAT
[ENA]
¢þ
>WENV180344040
OBLK01195497
[OBLK] soil metagenome; Clay
332
258
-
fMet
CAT
[ENA]
¢þ
>WENV180356043
OBNJ01020643
[OBNJ] sediment metagenome; sediment
178
252
+
fMet
CAT
[ENA]
¢þ
>WENV180694545
OCZS012407871
[OCZS] soil metagenome; soil
71
146
+
fMet
CAT
[ENA]
¢þ
>W141073128
ASRX01000042
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
102591
102515
-
Met
CAT
[ENA]
¡û
>W141073129
ASRX01000042
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
95849
95775
-
Met
CAT
[ENA]
¡û
>C08008911
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
813295
813371
+
Met
CAT
[Ensembl]
¡û
>WENV170564688
CZKU01000539
[CZKU] soil metagenome genome assembly CiPEHR-AK-2010-FBin.27, contig:; soil
708
632
-
Met
CAT
[ENA]
¢þ
>C181012481
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
1043869
1043945
+
Met
CAT
-
¡û
>C191010010
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
831012
831088
+
Met
CAT
-
¡û
>C191010060
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
1091374
1091450
+
Met
CAT
-
¡û
>C191010061
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
1093665
1093741
+
Met
CAT
-
¡û
>C151092022
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
1950811
1950735
-
Met
CAT
-
¡û
>C151092023
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
1950564
1950488
-
Met
CAT
-
¡û
>C151093442
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
7064160
7064236
+
Met
CAT
-
¡û
>C151093443
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
7064398
7064474
+
Met
CAT
-
¡û
>ENV09003694
ADGO01138915
Compost metagenome contig00001
240
164
-
Met
CAT
[ENA]
¡û
>W1610048967
BBEO01000741
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
1774
1696
-
Met
CAT
[ENA]
¡û
>C131010744
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
1033003
1033079
+
Met
CAT
[Ensembl]
¡û
>C131010745
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
1035348
1035424
+
Met
CAT
[Ensembl]
¡û
>W1610520405
JELX01003850
Myxococcota
Sorangium cellulosum [JELX]
452
376
-
Met
CAT
[ENA]
¡û
>W1610520406
JELX01003980
Myxococcota
Sorangium cellulosum [JELX]
554
478
-
Met
CAT
[ENA]
¡û
>W1610520414
JELY01000166
Myxococcota
Sorangium cellulosum [JELY]
695
619
-
Met
CAT
[ENA]
¡û
>W1610520475
JELZ01000588
Myxococcota
Sorangium cellulosum [JELZ]
2955
3031
+
Met
CAT
[ENA]
¡û
>W1610520540
JEMA01000789
Myxococcota
Sorangium cellulosum [JEMA]
2391
2315
-
Met
CAT
[ENA]
¡û
>W1610520609
JEMB01003442
Myxococcota
Sorangium cellulosum [JEMB]
76
152
+
Met
CAT
[ENA]
¡û
>W1610520619
JEMC01001437
Myxococcota
Sorangium cellulosum [JEMC]
1567
1641
+
Met
CAT
[ENA]
¡û
>W1610520630
JEMC01001928
Myxococcota
Sorangium cellulosum [JEMC]
1660
1736
+
Met
CAT
[ENA]
¡û
>W1610520730
JEME01001263
Myxococcota
Sorangium cellulosum [JEME]
2905
2981
+
Met
CAT
[ENA]
¡û
>W1610520731
JEME01001263
Myxococcota
Sorangium cellulosum [JEME]
5254
5330
+
Met
CAT
[ENA]
¡û
>W1710045439
BBEO01000741
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
1774
1696
-
Met
CAT
[ENA]
¡û
>W1710615883
JELX01003850
Myxococcota
Sorangium cellulosum [JELX]
452
376
-
Met
CAT
[ENA]
¡û
>W1710615884
JELX01003980
Myxococcota
Sorangium cellulosum [JELX]
554
478
-
Met
CAT
[ENA]
¡û
>W1710615892
JELY01000166
Myxococcota
Sorangium cellulosum [JELY]
695
619
-
Met
CAT
[ENA]
¡û
>W1710615953
JELZ01000588
Myxococcota
Sorangium cellulosum [JELZ]
2955
3031
+
Met
CAT
[ENA]
¡û
>W1710616018
JEMA01000789
Myxococcota
Sorangium cellulosum [JEMA]
2391
2315
-
Met
CAT
[ENA]
¡û
>W1710616087
JEMB01003442
Myxococcota
Sorangium cellulosum [JEMB]
76
152
+
Met
CAT
[ENA]
¡û
>W1710616097
JEMC01001437
Myxococcota
Sorangium cellulosum [JEMC]
1567
1641
+
Met
CAT
[ENA]
¡û
>W1710616108
JEMC01001928
Myxococcota
Sorangium cellulosum [JEMC]
1660
1736
+
Met
CAT
[ENA]
¡û
>W1710616208
JEME01001263
Myxococcota
Sorangium cellulosum [JEME]
2905
2981
+
Met
CAT
[ENA]
¡û
>W1710616209
JEME01001263
Myxococcota
Sorangium cellulosum [JEME]
5254
5330
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK