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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176341 (16 seq.)
>W1711090898
LTBA01000032
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
8520
8444
-
Arg
ACG
[ENA]
¡û
>WENV170003014
AGTN01195724
[AGTN] bioreactor metagenome; poplar biomass
64
140
+
Arg
ACG
[ENA]
¢þ
>W141427512
JENL01000033
Bacillota
Clostridium novyi A str. 4540 [JENL]
11068
10992
-
Arg
ACG
[ENA]
¡û
>W141427575
JENM01000041
Bacillota
Clostridium novyi A str. BKT29909 [JENM]
10436
10512
+
Arg
ACG
[ENA]
¡û
>W141427639
JENN01000042
Bacillota
Clostridium novyi A str. GD211209 [JENN]
11058
10982
-
Arg
ACG
[ENA]
¡û
>W141427707
JENO01000036
Bacillota
Clostridium botulinum C/D str. It1 [JENO]
11342
11266
-
Arg
ACG
[ENA]
¡û
>C181047810
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5486641
5486717
+
Arg
ACG
-
¡û
>C191138074
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
25478
25554
+
Arg
ACG
-
¡û
>W141565595
JIBU02000041
Bacillota
Clostridium drakei [JIBU]
26998
26922
-
Arg
ACG
[ENA]
¡û
>W141569562
JIDX01000050
Bacillota
Clostridium scatologenes [JIDX]
47703
47627
-
Arg
ACG
[ENA]
¡û
>W09135092
ACVI01000085
Bacillota
Clostridium carboxidivorans P7 [ACVI]
5698
5774
+
Arg
ACG
[ENA]
¡û
>C151062299
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
4434931
4434855
-
Arg
ACG
[Ensembl]
¡û
>C151086636
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4636782
4636858
+
Arg
ACG
[Ensembl]
¡û
>W11115442
ADEK01000046
Bacillota
Clostridium carboxidivorans P7 [ADEK]
9813
9889
+
Arg
ACG
[ENA]
¡û
>C131002490
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
35517
35593
+
Arg
ACG
[Ensembl]
¡û
>W1610925097
LTBA01000032
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
8520
8444
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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