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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17638 (51 seq.)
>W1710914142
LNTC01000062
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
5304
5214
-
Ser
GCT
[ENA]
¡û
>W1711055304
LRUQ01000092
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
14336
14246
-
Ser
GCT
[ENA]
¡û
>W1711055331
LRUR01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
35382
35292
-
Ser
GCT
[ENA]
¡û
>W1711055346
LRUS01000068
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
1530
1440
-
Ser
GCT
[ENA]
¡û
>W1711055370
LRUT01000042
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
7040
6950
-
Ser
GCT
[ENA]
¡û
>W1711055415
LRUU01000079
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
64652
64742
+
Ser
GCT
[ENA]
¡û
>W1711055443
LRUV01000053
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
35389
35479
+
Ser
GCT
[ENA]
¡û
>WENV180283558
OBID01000705
[OBID] metagenome; sludge
10018
10108
+
Ser
GCT
[ENA]
¢þ
>C08000254
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1854099
1854189
+
Ser
GCT
[Ensembl]
¡û
>W141291666
JATO01000018
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
30472
30562
+
Ser
GCT
[ENA]
¡û
>WENV170012763
ASRO01000188
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
351
261
-
Ser
GCT
[ENA]
¢þ
>WENV170012825
ASRP01000089
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9793
9883
+
Ser
GCT
[ENA]
¢þ
>WENV170012947
ASRQ01000148
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20543
20633
+
Ser
GCT
[ENA]
¢þ
>WENV170013050
ASRR01001025
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
341
251
-
Ser
GCT
[ENA]
¢þ
>WENV170014442
AYRG01000129
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20543
20633
+
Ser
GCT
[ENA]
¢þ
>C181225251
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1854092
1854182
+
Ser
GCT
-
¡û
>C191084445
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2260303
2260213
-
Ser
GCT
-
¡û
>C191095109
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
625724
625634
-
Ser
GCT
-
¡û
>C191178271
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1813229
1813319
+
Ser
GCT
-
¡û
>W141814480
JQGL01000031
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
4801
4891
+
Ser
GCT
[ENA]
¡û
>W1910810919
MUXF01000014
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
61700
61790
+
Ser
GCT
[ENA]
¡û
>W1911424353
NXGC01000010
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
3646
3556
-
Ser
GCT
[ENA]
¡û
>W1911424365
NXGD01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
54585
54495
-
Ser
GCT
[ENA]
¡û
>W1911424550
NXGH01000004
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
78881
78971
+
Ser
GCT
[ENA]
¡û
>W1911424598
NXGI01000012
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
220471
220561
+
Ser
GCT
[ENA]
¡û
>W1911424679
NXGK01000025
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
172
82
-
Ser
GCT
[ENA]
¡û
>W1911426350
NXIG01000021
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
20118
20208
+
Ser
GCT
[ENA]
¡û
>W1911426375
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
44400
44490
+
Ser
GCT
[ENA]
¡û
>W1911426448
NXII01000031
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
2101
2191
+
Ser
GCT
[ENA]
¡û
>W1911426482
NXIJ01000025
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
19549
19459
-
Ser
GCT
[ENA]
¡û
>W1911576416
PDJZ01000016
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
32322
32412
+
Ser
GCT
[ENA]
¡û
>W1911576439
PDKB01000003
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
123169
123079
-
Ser
GCT
[ENA]
¡û
>W1911746048
QVQX01000009
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
61907
61997
+
Ser
GCT
[ENA]
¡û
>W1911775183
QXMK01000012
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
22798
22708
-
Ser
GCT
[ENA]
¡û
>W1911775371
QXNB01000014
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
18204
18294
+
Ser
GCT
[ENA]
¡û
>C11100375
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1737650
1737740
+
Ser
GCT
[Ensembl]
¡û
>C11101065
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2385403
2385313
-
Ser
GCT
[Ensembl]
¡û
>W1510762842
JAIQ01000111
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
14083
14173
+
Ser
GCT
[ENA]
¡û
>W1510762910
JAIS01000080
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
10808
10718
-
Ser
GCT
[ENA]
¡û
>W1510762947
JAIT01000062
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
6177
6087
-
Ser
GCT
[ENA]
¡û
>W1510762965
JAIU01000034
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
14714
14804
+
Ser
GCT
[ENA]
¡û
>W1510763041
JAIW01000070
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
15073
15163
+
Ser
GCT
[ENA]
¡û
>W1510763066
JAIX01000074
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
10808
10718
-
Ser
GCT
[ENA]
¡û
>W1511327784
JQIP01000012
Campylobacterota
Sulfurovum sp. AS07-7 [JQIP]
4463
4553
+
Ser
GCT
[ENA]
¡û
>W11143291
AEPT01000028
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
13624
13714
+
Ser
GCT
[ENA]
¡û
>W1610896350
LRUQ01000092
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
14336
14246
-
Ser
GCT
[ENA]
¡û
>W1610896377
LRUR01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
35382
35292
-
Ser
GCT
[ENA]
¡û
>W1610896392
LRUS01000068
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
1530
1440
-
Ser
GCT
[ENA]
¡û
>W1610896416
LRUT01000042
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
7040
6950
-
Ser
GCT
[ENA]
¡û
>W1610896461
LRUU01000079
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
64652
64742
+
Ser
GCT
[ENA]
¡û
>W1610896489
LRUV01000053
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
35389
35479
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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