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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176417 (25 seq.)
>WENV180264003
OBEQ011527989
[OBEQ] groundwater metagenome; groundwater
263
338
+
Asp
GTC
[ENA]
¡û
>WENV183668643
ORJL010761854
[ORJL] groundwater metagenome; groundwater
1824
1899
+
Asp
GTC
[ENA]
¡û
>WENV183672399
ORJL011166636
[ORJL] groundwater metagenome; groundwater
65
140
+
Asp
GTC
[ENA]
¡û
>WENV183672400
ORJL011166734
[ORJL] groundwater metagenome; groundwater
481
406
-
Asp
GTC
[ENA]
¡û
>WENV183673492
ORJL011281294
[ORJL] groundwater metagenome; groundwater
793
718
-
Asp
GTC
[ENA]
¡û
>WENV183688296
ORMF011270553
[ORMF] groundwater metagenome; groundwater
292
217
-
Asp
GTC
[ENA]
¡û
>W1910707985
MFIA01000033
Unclassified
Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_44_16 [MFIA]
216
141
-
Asp
GTC
[ENA]
¡û
>W1910710299
MFLI01000006
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_54_22 [MFLI]
14286
14211
-
Asp
GTC
[ENA]
¡û
>W1910710323
MFLJ01000010
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_55_17 [MFLJ]
664
589
-
Asp
GTC
[ENA]
¡û
>W1910710524
MFLQ01000012
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_12_FULL_54_16 [MFLQ]
1819
1744
-
Asp
GTC
[ENA]
¡û
>W1910710898
MFMD01000013
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_55_19 [MFMD]
10749
10824
+
Asp
GTC
[ENA]
¡û
>W1910711077
MFMI01000027
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_02_FULL_54_13 [MFMI]
12133
12208
+
Asp
GTC
[ENA]
¡û
>W1910711305
MFMR01000046
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MFMR]
20301
20226
-
Asp
GTC
[ENA]
¡û
>W2010841411
MFIA01000033
Unclassified
Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_01_FULL_44_16 [MFIA]
216
141
-
Asp
GTC
[ENA]
¡û
>W2010843725
MFLI01000006
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_54_22 [MFLI]
14286
14211
-
Asp
GTC
[ENA]
¡û
>W2010843749
MFLJ01000010
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_55_17 [MFLJ]
664
589
-
Asp
GTC
[ENA]
¡û
>W2010843950
MFLQ01000012
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_12_FULL_54_16 [MFLQ]
1819
1744
-
Asp
GTC
[ENA]
¡û
>W2010844324
MFMD01000013
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_55_19 [MFMD]
10749
10824
+
Asp
GTC
[ENA]
¡û
>W2010844503
MFMI01000027
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_02_FULL_54_13 [MFMI]
12133
12208
+
Asp
GTC
[ENA]
¡û
>W2010844731
MFMR01000046
Unclassified
Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MFMR]
20301
20226
-
Asp
GTC
[ENA]
¡û
>W1511611543
LCHU01000017
Unclassified
Candidatus Giovannonibacteria bacterium GW2011_GWA2_44_13b bacterium GW2011_GWA2_44_13b [LCHU]
18868
18943
+
Asp
GTC
[ENA]
¡û
>W1511618986
LCRS01000074
Unclassified
Candidatus Peribacteria bacterium GW2011_GWC2_54_8 GW2011_GWC2_54_8 [LCRS]
1111
1188
+
Asp
GTC
[ENA]
¡û
>W1511619074
LCRW01000034
Unclassified
Parcubacteria group bacterium GW2011_GWB1_55_9 GW2011_GWB1_55_9 [LCRW]
7804
7879
+
Asp
GTC
[ENA]
¡û
>W1511619160
LCRY01000003
Unclassified
Parcubacteria group bacterium GW2011_GWA1_56_13 GW2011_GWA1_56_13 [LCRY]
86298
86375
+
Asp
GTC
[ENA]
¡û
>W1511619229
LCSC01000002
Unclassified
Parcubacteria group bacterium GW2011_GWB1_57_6 GW2011_GWB1_57_6 [LCSC]
33096
33173
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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