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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176463 (95 seq.)
>W1711069191
LSFL01000042
Bacteroidota
Polaribacter reichenbachii [LSFL]
354069
353995
-
Arg
TCT
[ENA]
¡û
>W1711167288
LVWE01000058
Bacteroidota
Polaribacter atrinae [LVWE]
61552
61626
+
Arg
TCT
[ENA]
¡û
>W1711359993
MDJD01000034
Bacteroidota
Flavivirga aquatica SK-16 [MDJD]
203650
203726
+
Arg
TCT
[ENA]
¡û
>W1711621231
MPCX01000001
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
40900
40974
+
Arg
TCT
[ENA]
¡û
>W1712097616
NIDK01000007
Bacteroidota
Polaribacter haliotis [NIDK]
11670
11596
-
Arg
TCT
[ENA]
¡û
>W1712097638
NIDL01000001
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
556766
556692
-
Arg
TCT
[ENA]
¡û
>W131066936
ANPJ01000010
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
235782
235856
+
Arg
TCT
[ENA]
¡û
>C171094197
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
2545787
2545861
+
Arg
TCT
-
¡û
>C171098453
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
261653
261727
+
Arg
TCT
-
¡û
>w013082
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
1057401
1057325
-
Arg
TCT
[ENA]
¡û
>w013018
AAMZ01000001
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
137455
137531
+
Arg
TCT
[ENA]
¡û
>WENV180101614
OAOV01028561
[OAOV] marine metagenome; ENVO:00002010
108
182
+
Arg
TCT
[ENA]
¢þ
>WENV180102846
OAOZ01030506
[OAOZ] marine metagenome; ENVO:00002010
316
242
-
Arg
TCT
[ENA]
¢þ
>WENV180214602
OBAP01018026
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
217
143
-
Arg
TCT
[ENA]
¢þ
>WENV180383281
OBOU01024638
[OBOU] marine metagenome; ENV:00002010
417
343
-
Arg
TCT
[ENA]
¢þ
>WENV180399739
OBQO01023915
[OBQO] marine metagenome; ENVO:00002010
295
369
+
Arg
TCT
[ENA]
¢þ
>W08004301
ABHI01000003
Bacteroidota
Flavobacteriales bacterium ALC-1 [ABHI]
394350
394274
-
Arg
TCT
[ENA]
¡û
>WENV181321343
OFKL01011346
[OFKL] marine metagenome; seawater
82
8
-
Arg
TCT
[ENA]
¢þ
>WENV181325979
OFLJ01060460
[OFLJ] seawater metagenome; seawater
134
60
-
Arg
TCT
[ENA]
¢þ
>WENV181391472
OFRT01010434
[OFRT] seawater metagenome; seawater
201
127
-
Arg
TCT
[ENA]
¢þ
>W141231619
BAUG01000014
Bacteroidota
Tenacibaculum maritimum NBRC 15946 [BAUG]
24639
24565
-
Arg
TCT
[ENA]
¡û
>WENV182547377
OJBS01001420
[OJBS] seawater metagenome; Sea water
2161
2235
+
Arg
TCT
[ENA]
¢þ
>WENV182558269
OJDL01028033
[OJDL] seawater metagenome; Sea water
447
373
-
Arg
TCT
[ENA]
¢þ
>WENV182558931
OJDN01017247
[OJDN] seawater metagenome; Sea water
84
158
+
Arg
TCT
[ENA]
¢þ
>WENV182564410
OJEF01000051
[OJEF] seawater metagenome; Sea water
832
758
-
Arg
TCT
[ENA]
¢þ
>WENV182564454
OJEF01000267
[OJEF] seawater metagenome; Sea water
13730
13804
+
Arg
TCT
[ENA]
¢þ
>WENV182567412
OJEO01000645
[OJEO] seawater metagenome; Sea water
11241
11315
+
Arg
TCT
[ENA]
¢þ
>WENV182567829
OJEP01000509
[OJEP] seawater metagenome; Sea water
6292
6366
+
Arg
TCT
[ENA]
¢þ
>WENV182571679
OJFK01004152
[OJFK] seawater metagenome; Sea water
2574
2500
-
Arg
TCT
[ENA]
¢þ
>WENV182574135
OJFR01000102
[OJFR] seawater metagenome; Sea water
30054
30128
+
Arg
TCT
[ENA]
¢þ
>WENV182578657
OJGP01000020
[OJGP] seawater metagenome; Sea water
1779
1705
-
Arg
TCT
[ENA]
¢þ
>WENV182581352
OJGX01003616
[OJGX] seawater metagenome; Sea water
174
100
-
Arg
TCT
[ENA]
¢þ
>WENV182586886
OJHK01010051
[OJHK] seawater metagenome; Sea water
1513
1439
-
Arg
TCT
[ENA]
¢þ
>WENV182590766
OJIK01000322
[OJIK] seawater metagenome; Sea water
12669
12743
+
Arg
TCT
[ENA]
¢þ
>WENV182594010
OJIV01000048
[OJIV] seawater metagenome; Sea water
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV183056108
OLHI01000091
[OLHI] seawater metagenome; Sea water
24944
25018
+
Arg
TCT
[ENA]
¢þ
>WENV183056756
OLHJ01011394
[OLHJ] seawater metagenome; Sea water
1417
1343
-
Arg
TCT
[ENA]
¢þ
>WENV183061293
OLHZ01002933
[OLHZ] seawater metagenome; Sea water
834
760
-
Arg
TCT
[ENA]
¢þ
>WENV183061357
OLHZ01004600
[OLHZ] seawater metagenome; Sea water
1724
1798
+
Arg
TCT
[ENA]
¢þ
>WENV183617706
OOEG01054351
[OOEG] marine metagenome; sea ice
310
384
+
Arg
TCT
[ENA]
¢þ
>WENV183620417
OOFR01054084
[OOFR] marine metagenome; seawater
363
289
-
Arg
TCT
[ENA]
¢þ
>WENV183620438
OOFR01060003
[OOFR] marine metagenome; seawater
382
308
-
Arg
TCT
[ENA]
¢þ
>WENV183622830
OOFW01018606
[OOFW] marine metagenome; sea ice
24
98
+
Arg
TCT
[ENA]
¢þ
>WENV183625178
OOGF01002831
[OOGF] marine metagenome; seawater
1403
1477
+
Arg
TCT
[ENA]
¢þ
>WENV183628375
OOGN01025748
[OOGN] marine metagenome; sea ice
287
361
+
Arg
TCT
[ENA]
¢þ
>WENV170327030
CESU01038996
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
520
594
+
Arg
TCT
[ENA]
¢þ
>WENV170567449
FLMP01000592
[FLMP] seawater metagenome; seawater
11021
11095
+
Arg
TCT
[ENA]
¢þ
>WENV170569625
FLMP01252782
[FLMP] seawater metagenome; seawater
540
466
-
Arg
TCT
[ENA]
¢þ
>WENV170569799
FLMP01306271
[FLMP] seawater metagenome; seawater
223
147
-
Arg
TCT
[ENA]
¢þ
>WENV170624566
FUWD013183470
[FUWD] metagenome; unknown
3563
3637
+
Arg
TCT
[ENA]
¢þ
>WENV170624569
FUWD013183471
[FUWD] metagenome; unknown
250
324
+
Arg
TCT
[ENA]
¢þ
>WENV170625481
FUWD013198400
[FUWD] metagenome; unknown
594
520
-
Arg
TCT
[ENA]
¢þ
>WENV170628561
FUWD013248888
[FUWD] metagenome; unknown
19483
19557
+
Arg
TCT
[ENA]
¢þ
>WENV170782710
MAAC01011178
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
86412
86486
+
Arg
TCT
[ENA]
¢þ
>WENV170950137
MEHZ011479675
[MEHZ] marine metagenome; marine surface water
1
75
+
Arg
TCT
[ENA]
¢þ
>WENV170951401
MEHZ011551213
[MEHZ] marine metagenome; marine surface water
6031
6105
+
Arg
TCT
[ENA]
¢þ
>C181113428
CP025119
Bacteroidota
Polaribacter sp. ALD11 [CP025119]
1415391
1415317
-
Arg
TCT
-
¡û
>C181122740
CP025791
Bacteroidota
Flavivirga eckloniae ECD14 [CP025791]
485449
485375
-
Arg
TCT
-
¡û
>C191018106
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
2011264
2011190
-
Arg
TCT
-
¡û
>W141563343
JHZX01000001
Bacteroidota
Sediminibacter sp. Hel_I_10 [JHZX]
406838
406762
-
Arg
TCT
[ENA]
¡û
>W1910547679
FZNY01000010
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
133735
133809
+
Arg
TCT
[ENA]
¡û
>W1910695575
MDVN01000024
Bacteroidota
Gaetbulibacter sp. 4G1 [MDVN]
563083
563009
-
Arg
TCT
[ENA]
¡û
>W1910796534
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
729579
729653
+
Arg
TCT
[ENA]
¡û
>W1810173131
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
2117009
2116935
-
Arg
TCT
[ENA]
¡û
>W1810223455
POTB01000001
Bacteroidota
Hanstruepera ponticola L53 [POTB]
13226
13152
-
Arg
TCT
[ENA]
¡û
>W1810586311
QFFG01000003
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
244659
244585
-
Arg
TCT
[ENA]
¡û
>W1810588123
QFRI01000003
Bacteroidota
Algibacter marinivivus ZY111 [QFRI]
59564
59490
-
Arg
TCT
[ENA]
¡û
>W1810693699
QLLO01000003
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
74705
74631
-
Arg
TCT
[ENA]
¡û
>W1810756027
QPEJ01000016
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
39727
39653
-
Arg
TCT
[ENA]
¡û
>C151018430
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
2821151
2821077
-
Arg
TCT
[Ensembl]
¡û
>C151048601
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
592607
592531
-
Arg
TCT
[Ensembl]
¡û
>W1510012888
BBNQ01000004
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
149514
149588
+
Arg
TCT
[ENA]
¡û
>W1510013000
BBNU01000001
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
190834
190908
+
Arg
TCT
[ENA]
¡û
>C11111989
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
2893312
2893238
-
Arg
TCT
[Ensembl]
¡û
>W1511296860
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1224174
1224248
+
Arg
TCT
[ENA]
¡û
>W1511360762
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
662236
662162
-
Arg
TCT
[ENA]
¡û
>W1511432844
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
1234825
1234749
-
Arg
TCT
[ENA]
¡û
>W1511505197
JXJO01000009
Bacteroidota
Psychroserpens damuponensis JCM 17632 [JXJO]
85167
85243
+
Arg
TCT
[ENA]
¡û
>W1511576860
LAQB01000078
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
2013
1939
-
Arg
TCT
[ENA]
¡û
>W11152619
AEYR01000003
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
61471
61545
+
Arg
TCT
[ENA]
¡û
>W1511694616
LGBR01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [LGBR]
60990
60916
-
Arg
TCT
[ENA]
¡û
>W11169960
AFPB01000163
Bacteroidota
Aquimarina agarivorans HQM9 [AFPB]
27657
27733
+
Arg
TCT
[ENA]
¡û
>C161047109
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
793022
792948
-
Arg
TCT
[Ensembl]
¡û
>C161083524
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
2202945
2203019
+
Arg
TCT
-
¡û
>W1610026008
AUYN01000009
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
1051277
1051351
+
Arg
TCT
[ENA]
¡û
>W121031946
AHHE02000087
Bacteroidota
Aquimarina agarilytica ZC1 [AHHE]
4789
4713
-
Arg
TCT
[ENA]
¡û
>W121110471
ALIH01000002
Bacteroidota
Algibacter luteus P7-3-5 [ALIH]
84006
83930
-
Arg
TCT
[ENA]
¡û
>W1610909719
LSFL01000042
Bacteroidota
Polaribacter reichenbachii [LSFL]
354069
353995
-
Arg
TCT
[ENA]
¡û
>W1610977619
LVWE01000058
Bacteroidota
Polaribacter atrinae [LVWE]
61552
61626
+
Arg
TCT
[ENA]
¡û
>WENV078204
AAFZ01007701
Fossil microbial community from Whale Fall (Santa Cruz Basin)
636
560
-
Arg
TCT
[ENA]
>W1710022057
AUYN01000009
Bacteroidota
Wocania ichthyoenteri Th78 [AUYN]
1051277
1051351
+
Arg
TCT
[ENA]
¡û
>W1710538004
FNUE01000002
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
1159451
1159377
-
Arg
TCT
[ENA]
¡û
>W1710570956
FOVN01000002
Bacteroidota
Bizionia echini [FOVN]
494814
494890
+
Arg
TCT
[ENA]
¡û
>W1710582222
FPKV01000002
Bacteroidota
Flaviramulus basaltis [FPKV]
397116
397042
-
Arg
TCT
[ENA]
¡û
>W1710587340
FQYK01000004
Bacteroidota
Algibacter luteus lutea [FQYK]
283100
283176
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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