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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176477 (14 seq.)
>W1711414218
MGZD01000068
Gemmatimonadota
Gemmatimonadetes bacterium GWC2_71_9 [MGZD]
9428
9502
+
Val
TAC
[ENA]
¡û
>W1711414268
MGZE01000259
Gemmatimonadota
Gemmatimonadetes bacterium RBG_16_66_8 [MGZE]
2089
2015
-
Val
TAC
[ENA]
¡û
>WENV180351756
OBLQ010098689
[OBLQ] soil metagenome; soil
602
528
-
Val
TAC
[ENA]
¡û
>WENV180353572
OBLQ010871794
[OBLQ] soil metagenome; soil
244
170
-
Val
TAC
[ENA]
¡û
>WENV180690678
OCZS010017265
[OCZS] soil metagenome; soil
679
753
+
Val
TAC
[ENA]
¡û
>WENV181165282
OEIR01706672
[OEIR] soil metagenome; soil
96
170
+
Val
TAC
[ENA]
¡û
>WENV181184542
OEKJ01000059
[OEKJ] metagenome; 1998
2008
1934
-
Val
TAC
[ENA]
¡û
>WENV181184770
OEKQ01000443
[OEKQ] metagenome; 1998
6720
6646
-
Val
TAC
[ENA]
¡û
>WENV170573323
FLYK01007270
[FLYK] hot springs metagenome; Sediment
185
259
+
Val
TAC
[ENA]
¡û
>WENV170575186
FLYN01041142
[FLYN] hot springs metagenome; Sediment
2122
2048
-
Val
TAC
[ENA]
¡û
>W1910729785
MGZF01000072
Gemmatimonadota
Gemmatimonadetes bacterium RIFCSPLOWO2_02_FULL_71_11 [MGZF]
11422
11348
-
Val
TAC
[ENA]
¡û
>W1910729811
MGZG01000660
Gemmatimonadota
Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9 [MGZG]
1745
1819
+
Val
TAC
[ENA]
¡û
>W2010863215
MGZF01000072
Gemmatimonadota
Gemmatimonadetes bacterium RIFCSPLOWO2_02_FULL_71_11 [MGZF]
11422
11348
-
Val
TAC
[ENA]
¡û
>W2010863241
MGZG01000660
Gemmatimonadota
Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9 [MGZG]
1745
1819
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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