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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176500 (125 seq.)
>W1711191415
LWSP01000035
Actinomycetota
Gardnerella vaginalis [LWSP]
12061
11985
-
Met
CAT
[ENA]
¡û
>W1711540072
MLZL01000008
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
28373
28447
+
Met
CAT
[ENA]
¡û
>W131217498
ATWW01000009
Actinomycetota
Bifidobacterium pseudolongum AGR2145 [ATWW]
42321
42395
+
Met
CAT
[ENA]
¡û
>W131232725
AUJM01000011
Actinomycetota
Bifidobacterium sp. AGR2158 [AUJM]
322855
322931
+
Met
CAT
[ENA]
¡û
>WENV180217165
OBAR01000604
[OBAR] human gut metagenome; human gut
11975
11901
-
Ile2
CAT
[ENA]
¢þ
>WENV180277919
OBHX01001233
[OBHX] metagenome; feces
1441
1367
-
Ile2
CAT
[ENA]
¢þ
>WENV180332881
OBLF01000022
[OBLF] metagenome; feces
113168
113242
+
Ile2
CAT
[ENA]
¢þ
>WENV180347399
OBLO01000251
[OBLO] metagenome; feces
525
451
-
Ile2
CAT
[ENA]
¢þ
>WENV180443567
OBWY01015583
[OBWY] human gut metagenome; faeces
735
809
+
Ile2
CAT
[ENA]
¢þ
>WENV180495893
OCAC01000060
[OCAC] human gut metagenome; faeces
22179
22105
-
Ile2
CAT
[ENA]
¢þ
>WENV180598678
OCPN01000014
[OCPN] human gut metagenome; faeces
28402
28476
+
Ile2
CAT
[ENA]
¢þ
>WENV181251573
OFFO01034616
[OFFO] mouse gut metagenome; faeces
195
269
+
Ile2
CAT
[ENA]
¢þ
>WENV181274126
OFGH01064869
[OFGH] mouse gut metagenome; faeces
590
516
-
Ile2
CAT
[ENA]
¢þ
>WENV181301278
OFHN01079385
[OFHN] mouse gut metagenome; faeces
176
250
+
Ile2
CAT
[ENA]
¢þ
>WENV181435858
OGDF01007046
[OGDF] human gut metagenome; human gut
9340
9414
+
Ile2
CAT
[ENA]
¢þ
>WENV181439778
OGDN01000196
[OGDN] human gut metagenome; human gut
95169
95095
-
Ile2
CAT
[ENA]
¢þ
>W141169134
AXVO01000003
Actinomycetota
Bifidobacterium choerinum DSM 20434 [AXVO]
45226
45302
+
Met
CAT
[ENA]
¡û
>WENV181751917
OGQQ01000705
[OGQQ] human gut metagenome; faeces
30154
30228
+
Ile2
CAT
[ENA]
¢þ
>WENV181904439
OGXX01012608
[OGXX] human gut metagenome; faeces
2951
3025
+
Ile2
CAT
[ENA]
¢þ
>W08009137
ABOT01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
319871
319945
+
Met
CAT
[ENA]
¡û
>WENV182314759
OHYA01034097
[OHYA] human gut metagenome; feces
326
252
-
Ile2
CAT
[ENA]
¢þ
>W141258214
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
1258165
1258091
-
Met
CAT
[ENA]
¡û
>WENV183136058
OLOF01000029
[OLOF] human gut metagenome; faeces
28386
28460
+
Ile2
CAT
[ENA]
¢þ
>WENV183144779
OLOL01008290
[OLOL] human gut metagenome; faeces
590
664
+
Ile2
CAT
[ENA]
¢þ
>WENV183147241
OLON01000024
[OLON] human gut metagenome; faeces
28366
28440
+
Ile2
CAT
[ENA]
¢þ
>WENV183171916
OLPC01001912
[OLPC] human gut metagenome; faeces
4913
4987
+
Ile2
CAT
[ENA]
¢þ
>WENV183174234
OLPE01000484
[OLPE] human gut metagenome; faeces
10400
10326
-
Ile2
CAT
[ENA]
¢þ
>WENV183182345
OLPK01000181
[OLPK] human gut metagenome; faeces
54348
54274
-
Ile2
CAT
[ENA]
¢þ
>WENV183281031
OLSB01027268
[OLSB] human gut metagenome; faeces
1077
1151
+
Ile2
CAT
[ENA]
¢þ
>WENV183291504
OLSI01002648
[OLSI] human gut metagenome; faeces
1441
1367
-
Ile2
CAT
[ENA]
¢þ
>WENV183507483
OMGY01025407
[OMGY] human gut metagenome; human gut
121
195
+
Ile2
CAT
[ENA]
¢þ
>WENV183792853
PPYF01464018
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2323
2397
+
Ile2
CAT
[ENA]
¢þ
>WENV170684144
LFRM01022736
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
413
339
-
Met
CAT
[ENA]
¢þ
>C181023422
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
602705
602779
+
Met
CAT
-
¡û
>C181027194
CP017695
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [CP017695]
1620875
1620801
-
Met
CAT
-
¡û
>C181030146
CP018044
Actinomycetota
Bifidobacterium choerinum FMB-1 [CP018044]
1278455
1278379
-
Met
CAT
-
¡û
>C181068146
CP022544
Actinomycetota
Bifidobacterium pseudolongum UMB-MBP-01 [CP022544]
609408
609482
+
Met
CAT
-
¡û
>C181071788
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
1104756
1104830
+
Met
CAT
-
¡û
>C191057534
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
620522
620596
+
Met
CAT
-
¡û
>W141523663
JGYM01000002
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
252224
252298
+
Met
CAT
[ENA]
¡û
>C191073848
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
602521
602595
+
Met
CAT
-
¡û
>W141524048
JGYU01000001
Actinomycetota
Bifidobacterium choerinum [JGYU]
197915
197991
+
Met
CAT
[ENA]
¡û
>C191078854
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
1569724
1569650
-
Met
CAT
-
¡û
>W141524657
JGZG01000005
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum [JGZG]
36954
37028
+
Met
CAT
[ENA]
¡û
>W141524705
JGZH01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum [JGZH]
198767
198841
+
Met
CAT
[ENA]
¡û
>C191144101
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
602654
602728
+
Met
CAT
-
¡û
>W141559160
JHWN01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JHWN]
297050
296976
-
Met
CAT
[ENA]
¡û
>W1910179787
BJKG01000010
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
19976
19902
-
Met
CAT
[ENA]
¡û
>W1910179827
BJKH01000011
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
701737
701663
-
Met
CAT
[ENA]
¡û
>W1910179857
BJKI01000001
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
19987
19913
-
Met
CAT
[ENA]
¡û
>W1910342673
FTRE01000001
Actinomycetota
Bifidobacterium animalis [FTRE]
320069
320143
+
Met
CAT
[ENA]
¡û
>W1910343292
FTRP01000001
Actinomycetota
Bifidobacterium animalis [FTRP]
320070
320144
+
Met
CAT
[ENA]
¡û
>C141002645
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
607343
607417
+
Met
CAT
[Ensembl]
¡û
>W1910814849
MVOG01000012
Actinomycetota
Bifidobacterium italicum 70 [MVOG]
6036
6111
+
Met
CAT
[ENA]
¡û
>W1910814884
MVOH01000006
Actinomycetota
Bifidobacterium criceti 71 [MVOH]
216190
216266
+
Met
CAT
[ENA]
¡û
>W1910829162
MWWW01000004
Actinomycetota
Bifidobacterium myosotis DSM 100196 [MWWW]
112614
112538
-
Met
CAT
[ENA]
¡û
>W1910910825
NHMR02000001
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
862800
862726
-
Met
CAT
[ENA]
¡û
>W1910923023
NIGQ01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
500561
500487
-
Met
CAT
[ENA]
¡û
>W1910923072
NIGR01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
500561
500487
-
Met
CAT
[ENA]
¡û
>W1911079611
NMYC01000005
Actinomycetota
Bifidobacterium anseris 72 [NMYC]
736548
736474
-
Met
CAT
[ENA]
¡û
>C09100992
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
602808
602882
+
Met
CAT
[Ensembl]
¡û
>C09101041
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
602650
602724
+
Met
CAT
[Ensembl]
¡û
>C09101090
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
602652
602726
+
Met
CAT
[Ensembl]
¡û
>W1911768209
QXGI01000007
Actinomycetota
Bifidobacterium castoris 2020B [QXGI]
52201
52276
+
Met
CAT
[ENA]
¡û
>W1810049132
PCGZ01000008
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1524B [PCGZ]
46039
46113
+
Met
CAT
[ENA]
¡û
>W1810049166
PCHA01000018
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1747B [PCHA]
77929
78003
+
Met
CAT
[ENA]
¡û
>W1810049233
PCHB01000012
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1744B [PCHB]
6860
6786
-
Met
CAT
[ENA]
¡û
>W1810049272
PCHC01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1619B [PCHC]
91743
91817
+
Met
CAT
[ENA]
¡û
>W1810049325
PCHD01000006
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1734B [PCHD]
77914
77988
+
Met
CAT
[ENA]
¡û
>W1810049406
PCHE01000023
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1691B [PCHE]
6891
6817
-
Met
CAT
[ENA]
¡û
>W1810049430
PCHF01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1595B [PCHF]
760097
760023
-
Met
CAT
[ENA]
¡û
>W1810049476
PCHG01000011
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1549B [PCHG]
109729
109803
+
Met
CAT
[ENA]
¡û
>W1810049525
PCHH01000001
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum 1520B [PCHH]
744260
744334
+
Met
CAT
[ENA]
¡û
>W1810049580
PCHI01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum 1370B [PCHI]
72413
72487
+
Met
CAT
[ENA]
¡û
>W1810084949
PESQ01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
292419
292345
-
Met
CAT
[ENA]
¡û
>W1810121957
PHUS01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
292411
292337
-
Met
CAT
[ENA]
¡û
>W1810541566
QDIK01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
268830
268904
+
Met
CAT
[ENA]
¡û
>W1810541632
QDIL01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
268805
268879
+
Met
CAT
[ENA]
¡û
>W1810541735
QDIN01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
170465
170391
-
Met
CAT
[ENA]
¡û
>W1810541780
QDIO01000028
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
24462
24388
-
Met
CAT
[ENA]
¡û
>W1810541826
QDIP01000002
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
268812
268886
+
Met
CAT
[ENA]
¡û
>W1810541926
QDIR01000002
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
268803
268877
+
Met
CAT
[ENA]
¡û
>W1810542027
QDIT01000001
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
701705
701631
-
Met
CAT
[ENA]
¡û
>W1810542076
QDIU01000001
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
701705
701631
-
Met
CAT
[ENA]
¡û
>W1810542113
QDIV01000012
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
1440
1366
-
Met
CAT
[ENA]
¡û
>W1810542305
QDIZ01000004
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
268804
268878
+
Met
CAT
[ENA]
¡û
>W1810813801
QRZV01000001
Actinomycetota
Bifidobacterium pseudolongum AF13-3LB [QRZV]
649627
649701
+
Met
CAT
[ENA]
¡û
>W1810837796
QSSU01000001
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
360295
360221
-
Met
CAT
[ENA]
¡û
>W1810839890
QSUF01000003
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
28358
28432
+
Met
CAT
[ENA]
¡û
>C151024232
CP007457
Actinomycetota
Bifidobacterium pseudolongum PV8-2 [CP007457]
662349
662423
+
Met
CAT
[Ensembl]
¡û
>C151026464
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
602563
602637
+
Met
CAT
[Ensembl]
¡û
>C151033685
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
603010
603084
+
Met
CAT
[Ensembl]
¡û
>C151042207
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
602486
602560
+
Met
CAT
[Ensembl]
¡û
>C151068778
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
602653
602727
+
Met
CAT
[Ensembl]
¡û
>C10101303
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
1238044
1238118
+
Met
CAT
[Ensembl]
¡û
>C10101345
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
602653
602727
+
Met
CAT
[Ensembl]
¡û
>C11101901
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
602647
602721
+
Met
CAT
[Ensembl]
¡û
>C11101950
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
602613
602687
+
Met
CAT
[Ensembl]
¡û
>C121002608
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
620642
620716
+
Met
CAT
[Ensembl]
¡û
>C121013644
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
602650
602724
+
Met
CAT
[Ensembl]
¡û
>C121013693
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
602651
602725
+
Met
CAT
[Ensembl]
¡û
>C161087441
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
1077698
1077772
+
Met
CAT
[Ensembl]
¡û
>W1610027699
AWFK01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
28315
28389
+
Met
CAT
[ENA]
¡û
>W1610027761
AWFL01000006
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
268577
268651
+
Met
CAT
[ENA]
¡û
>W1610027808
AWFM01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
268382
268456
+
Met
CAT
[ENA]
¡û
>W1610027853
AWFN01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
605455
605381
-
Met
CAT
[ENA]
¡û
>W1610027908
AWFO01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
246748
246822
+
Met
CAT
[ENA]
¡û
>W1610027968
AWFP01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
24524
24450
-
Met
CAT
[ENA]
¡û
>W1610027993
AWFQ01000001
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
681166
681240
+
Met
CAT
[ENA]
¡û
>W1610058888
BCAE01000095
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
4414
4488
+
Met
CAT
[ENA]
¡û
>W1610083124
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
180421
180495
+
Met
CAT
[ENA]
¡û
>W121031675
AHGW01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
28366
28440
+
Met
CAT
[ENA]
¡û
>C131012133
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
602515
602589
+
Met
CAT
[Ensembl]
¡û
>W1610519000
JDTV01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
65539
65465
-
Met
CAT
[ENA]
¡û
>W1610519182
JDTZ01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
262858
262784
-
Met
CAT
[ENA]
¡û
>W1610519632
JDUJ01000012
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
29894
29970
+
Met
CAT
[ENA]
¡û
>W1610992826
LWSP01000035
Actinomycetota
Gardnerella vaginalis [LWSP]
12061
11985
-
Met
CAT
[ENA]
¡û
>W1710023907
AWFK01000005
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
28315
28389
+
Met
CAT
[ENA]
¡û
>W1710023963
AWFN01000003
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
605455
605381
-
Met
CAT
[ENA]
¡û
>W1710024018
AWFO01000006
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
246748
246822
+
Met
CAT
[ENA]
¡û
>W1710055647
BCAE01000095
Actinomycetota
Actinobacteria bacterium UC5.1-1B11 [BCAE]
4414
4488
+
Met
CAT
[ENA]
¡û
>W1710088244
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
180421
180495
+
Met
CAT
[ENA]
¡û
>W1710614455
JDTV01000003
Actinomycetota
Bifidobacterium pseudolongum subsp. globosum DSM 20092 [JDTV]
65539
65465
-
Met
CAT
[ENA]
¡û
>W1710614637
JDTZ01000002
Actinomycetota
Bifidobacterium pseudolongum subsp. pseudolongum DSM 20099 [JDTZ]
262858
262784
-
Met
CAT
[ENA]
¡û
>W1710615087
JDUJ01000012
Actinomycetota
Bifidobacterium choerinum DSM 20434 [JDUJ]
29894
29970
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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