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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176507 (135 seq.)
>W1711055734
LRVD01000014
Actinomycetota
Cutibacterium avidum [LRVD]
110204
110128
-
Met
CAT
[ENA]
¡û
>W1711074681
LSJT01000062
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
48990
49066
+
Met
CAT
[ENA]
¡û
>W1711108079
LTTJ01000023
Actinomycetota
Propionibacterium sp. HMSC062D05 [LTTJ]
3361
3285
-
Met
CAT
[ENA]
¡û
>W1711267705
LZCI01000008
Actinomycetota
Cutibacterium acnes [LZCI]
134682
134606
-
Met
CAT
[ENA]
¡û
>W1711664203
MQVS01000005
Actinomycetota
Buchananella hordeovulneris [MQVS]
84675
84751
+
Met
CAT
[ENA]
¡û
>W1711664243
MQVT01000007
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
73141
73217
+
Met
CAT
[ENA]
¡û
>W1711664313
MQVU01000012
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
71746
71822
+
Met
CAT
[ENA]
¡û
>W1711697840
MSKR01000048
Actinomycetota
Actinomyces oris [MSKR]
7015
6939
-
Met
CAT
[ENA]
¡û
>W1711706715
MSRI01000006
Actinomycetota
Actinomyces naeslundii [MSRI]
98349
98425
+
Met
CAT
[ENA]
¡û
>W1711706784
MSRJ01000007
Actinomycetota
Actinomyces naeslundii [MSRJ]
124597
124673
+
Met
CAT
[ENA]
¡û
>W131222412
AUBF01000012
Actinomycetota
Schaalia suimastitidis DSM 15538 [AUBF]
26646
26722
+
Met
CAT
[ENA]
¡û
>C171055633
CP017040
Actinomycetota
Cutibacterium modestum F0672 [CP017040]
650626
650702
+
Met
CAT
-
¡û
>WENV180283814
OBID01003512
[OBID] metagenome; sludge
3313
3387
+
fMet
CAT
[ENA]
¢þ
>WENV180484755
OBZI01003931
[OBZI] human gut metagenome; faeces
772
846
+
fMet
CAT
[ENA]
¢þ
>WENV180559278
OCKC01000024
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
118655
118729
+
fMet
CAT
[ENA]
¢þ
>WENV180596697
OCPI01000324
[OCPI] human gut metagenome; faeces
20841
20915
+
fMet
CAT
[ENA]
¢þ
>WENV180697262
ODDD01001011
[ODDD] human metagenome; G_DNA_Posterior fornix
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180700181
ODDN01001011
[ODDN] human metagenome; G_DNA_Buccal mucosa
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180706322
ODEN01001011
[ODEN] human metagenome; G_DNA_Posterior fornix
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180782610
ODIQ01000071
[ODIQ] human metagenome; G_DNA_Tongue dorsum
42018
41944
-
fMet
CAT
[ENA]
¢þ
>WENV180819304
ODJR01000040
[ODJR] human metagenome; G_DNA_Tongue dorsum
7527
7453
-
fMet
CAT
[ENA]
¢þ
>WENV180830908
ODKB01019994
[ODKB] human metagenome; G_DNA_Tongue dorsum
94
20
-
fMet
CAT
[ENA]
¢þ
>WENV180836322
ODKE01112108
[ODKE] human metagenome; G_DNA_Supragingival plaque
217
293
+
fMet
CAT
[ENA]
¢þ
>WENV180842173
ODKM01001265
[ODKM] human metagenome; G_DNA_Buccal mucosa
110
34
-
fMet
CAT
[ENA]
¢þ
>WENV180896138
ODNI01000130
[ODNI] human metagenome; G_DNA_Tongue dorsum
20083
20009
-
fMet
CAT
[ENA]
¢þ
>WENV180899081
ODOA01001011
[ODOA] human metagenome; G_DNA_Tongue dorsum
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180903330
ODOU01001011
[ODOU] human metagenome; G_DNA_Tongue dorsum
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180903578
ODOY01001011
[ODOY] human metagenome; G_DNA_Tongue dorsum
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180903888
ODPD01001011
[ODPD] human metagenome; G_DNA_Stool
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180906710
ODPR01001011
[ODPR] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180907516
ODQE01001011
[ODQE] human metagenome; G_DNA_Stool
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180909725
ODQP01001011
[ODQP] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180911709
ODRV01001011
[ODRV] human metagenome; G_DNA_Buccal mucosa
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180911833
ODRX01001011
[ODRX] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV181073436
OEAO01000230
[OEAO] human metagenome; G_DNA_Tongue dorsum
12082
12008
-
fMet
CAT
[ENA]
¢þ
>WENV181090936
OEBC01006822
[OEBC] human metagenome; G_DNA_Supragingival plaque
596
520
-
fMet
CAT
[ENA]
¢þ
>WENV181112180
OEEL01000213
[OEEL] human metagenome; G_DNA_Tongue dorsum
1802
1876
+
fMet
CAT
[ENA]
¢þ
>WENV181158647
OEIH01004728
[OEIH] human metagenome; G_DNA_Supragingival plaque
651
575
-
fMet
CAT
[ENA]
¢þ
>WENV181187206
OENY01000315
[OENY] human gut metagenome; human gut
3261
3335
+
fMet
CAT
[ENA]
¢þ
>W141143274
AWSE01000158
Actinomycetota
Actinomyces johnsonii F0542 [AWSE]
3884
3808
-
Met
CAT
[ENA]
¡û
>W141155768
AXMF01000003
Actinomycetota
Propionibacterium sp. KPL2005 [AXMF]
1810061
1810137
+
Met
CAT
[ENA]
¡û
>W141233229
BAVO01000001
Actinomycetota
Cutibacterium acnes JCM 18918 [BAVO]
273835
273911
+
Met
CAT
[ENA]
¡û
>W141241436
CAHH01000046
Actinomycetota
Timonella senegalensis JC301 [CAHH]
30694
30770
+
Met
CAT
[ENA]
¡û
>W141241437
CAHH01000046
Actinomycetota
Timonella senegalensis JC301 [CAHH]
32199
32275
+
Met
CAT
[ENA]
¡û
>WENV170979711
MTKZ01103551
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
776
700
-
Met
CAT
[ENA]
¢þ
>C181055925
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
299457
299383
-
Met
CAT
-
¡û
>C181055926
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
299322
299246
-
Met
CAT
-
¡û
>C181212446
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
789252
789326
+
Met
CAT
-
¡û
>C181212447
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
789387
789463
+
Met
CAT
-
¡û
>W09109184
ABUA01000022
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
6186
6110
-
Met
CAT
[ENA]
¡û
>W09109185
ABUA01000022
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
6051
5975
-
Met
CAT
[ENA]
¡û
>W1911502889
OEQC01000003
Actinomycetota
Sanguibacter massiliensis Marseille-P3815 [OEQC]
1007384
1007458
+
Met
CAT
[ENA]
¡û
>W1911752279
QWLM01000001
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
68039
67965
-
Met
CAT
[ENA]
¡û
>C151039181
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
958137
958213
+
Met
CAT
[Ensembl]
¡û
>C151050247
CP009407
Actinomycetota
Mycobacteroides abscessus [CP009407]
3522370
3522294
-
Met
CAT
[Ensembl]
¡û
>C151070053
CP010519
Actinomycetota
Streptomyces albus DSM 41398 [CP010519]
4740277
4740351
+
Met
CAT
[Ensembl]
¡û
>C151070094
CP010519
Actinomycetota
Streptomyces albus DSM 41398 [CP010519]
2618220
2618146
-
Met
CAT
[Ensembl]
¡û
>C151072359
CP010797
Actinomycetota
Rhodococcus sp. B7740 [CP010797]
3543654
3543578
-
Met
CAT
[Ensembl]
¡û
>C151086021
CP011664
Actinomycetota
Streptomyces sp. Mg1 [CP011664]
586907
586983
+
Met
CAT
[Ensembl]
¡û
>W1510015667
BBRE01000003
Actinomycetota
Demequina oxidasica NBRC 106264 [BBRE]
217119
217045
-
Met
CAT
[ENA]
¡û
>W1510015702
BBRF01000001
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
254567
254493
-
Met
CAT
[ENA]
¡û
>W10120806
ADXQ01000015
Actinomycetota
Cutibacterium acnes HL087PA1 [ADXQ]
134758
134682
-
Met
CAT
[ENA]
¡û
>W10122156
ADYU01000021
Actinomycetota
Cutibacterium acnes HL036PA2 [ADYU]
69925
69849
-
Met
CAT
[ENA]
¡û
>W10122513
ADZC01000028
Actinomycetota
Cutibacterium acnes HL083PA1 [ADZC]
581315
581391
+
Met
CAT
[ENA]
¡û
>C10107903
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
789410
789486
+
Met
CAT
[Ensembl]
¡û
>C10107904
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
789545
789621
+
Met
CAT
[Ensembl]
¡û
>C10112535
FN554889
Actinomycetota
Streptomyces scabiei 87.22 [FN554889]
5462812
5462738
-
Met
CAT
[Ensembl]
¡û
>C10112567
FN554889
Actinomycetota
Streptomyces scabiei 87.22 [FN554889]
31521
31445
-
Met
CAT
[Ensembl]
¡û
>C11116500
CP002815
Actinomycetota
Cutibacterium acnes 6609 [CP002815]
1385668
1385744
+
Met
CAT
[Ensembl]
¡û
>C11123552
CP002638
Actinomycetota
Micromonospora maris AB-18-032 [CP002638]
5695872
5695798
-
Met
CAT
[Ensembl]
¡û
>W11125924
ADWB01000010
Actinomycetota
Cutibacterium acnes HL096PA3 [ADWB]
20984
20908
-
Met
CAT
[ENA]
¡û
>W11127550
ADXQ01000015
Actinomycetota
Cutibacterium acnes HL087PA1 [ADXQ]
134758
134682
-
Met
CAT
[ENA]
¡û
>W11128900
ADYU01000021
Actinomycetota
Cutibacterium acnes HL036PA2 [ADYU]
69925
69849
-
Met
CAT
[ENA]
¡û
>W11129257
ADZC01000028
Actinomycetota
Cutibacterium acnes HL083PA1 [ADZC]
581315
581391
+
Met
CAT
[ENA]
¡û
>W11138429
AEIQ01000009
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
7449
7373
-
Met
CAT
[ENA]
¡û
>W1511629596
LDCM01000001
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
64405
64331
-
Met
CAT
[ENA]
¡û
>W11174127
AFUK01000001
Actinomycetota
Propionibacterium sp. CC003-HC2 [AFUK]
2161580
2161656
+
Met
CAT
[ENA]
¡û
>C121007920
CP003195
Actinomycetota
Cutibacterium acnes TypeIA2 P.acn33 [CP003195]
1352137
1352213
+
Met
CAT
[Ensembl]
¡û
>C161045371
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
1371945
1372021
+
Met
CAT
[Ensembl]
¡û
>C161045385
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
4636934
4637010
+
Met
CAT
[Ensembl]
¡û
>C161079893
CP014956
Actinomycetota
Mycobacteroides abscessus FLAC029 [CP014956]
3599253
3599177
-
Met
CAT
-
¡û
>C161080064
CP014959
Actinomycetota
Mycobacteroides abscessus FLAC048 [CP014959]
3536820
3536744
-
Met
CAT
-
¡û
>C161091584
CP015849
Actinomycetota
Streptomyces sp. SAT1 [CP015849]
4846377
4846451
+
Met
CAT
[Ensembl]
¡û
>C161091603
CP015849
Actinomycetota
Streptomyces sp. SAT1 [CP015849]
3383202
3383128
-
Met
CAT
[Ensembl]
¡û
>C161100052
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
4005518
4005442
-
Met
CAT
-
¡û
>W1610052115
BBHP01001815
Actinomycetota
Streptomyces misionensis JCM 4497 [BBHP]
159
233
+
Met
CAT
[ENA]
¡û
>W1610052118
BBHP01002024
Actinomycetota
Streptomyces misionensis JCM 4497 [BBHP]
406
332
-
Met
CAT
[ENA]
¡û
>W1610058982
BCAN01000069
Actinomycetota
Streptomyces hygroscopicus sporocinereus [BCAN]
69628
69554
-
Met
CAT
[ENA]
¡û
>W1610058985
BCAN01000077
Actinomycetota
Streptomyces hygroscopicus sporocinereus [BCAN]
32141
32067
-
Met
CAT
[ENA]
¡û
>W1610058986
BCAN01000077
Actinomycetota
Streptomyces hygroscopicus sporocinereus [BCAN]
29927
29851
-
Met
CAT
[ENA]
¡û
>W1610068617
BCRM01000001
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
506757
506681
-
Met
CAT
[ENA]
¡û
>W1610068626
BCRM01000006
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
137325
137401
+
Met
CAT
[ENA]
¡û
>W1610069095
BCRV01000002
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
221907
221833
-
Met
CAT
[ENA]
¡û
>W1610079764
BDBW01000045
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
13141
13065
-
Met
CAT
[ENA]
¡û
>W1610079765
BDBW01000047
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
53462
53538
+
Met
CAT
[ENA]
¡û
>W1610507571
FLTQ01000001
Actinomycetota
Streptomyces sp. MnatMP-M77 [FLTQ]
317929
318003
+
Met
CAT
[ENA]
¡û
>W1610507572
FLTQ01000001
Actinomycetota
Streptomyces sp. MnatMP-M77 [FLTQ]
320396
320470
+
Met
CAT
[ENA]
¡û
>W1610507588
FLTQ01000013
Actinomycetota
Streptomyces sp. MnatMP-M77 [FLTQ]
165075
165149
+
Met
CAT
[ENA]
¡û
>W1610507600
FLTQ01000023
Actinomycetota
Streptomyces sp. MnatMP-M77 [FLTQ]
8126
8200
+
Met
CAT
[ENA]
¡û
>W1610617944
LGYZ01000088
Actinomycetota
Nocardia arizonensis [LGYZ]
1622
1546
-
Met
CAT
[ENA]
¡û
>W1610617947
LGYZ01000106
Actinomycetota
Nocardia arizonensis [LGYZ]
117690
117766
+
Met
CAT
[ENA]
¡û
>W1610642630
LJCX01000010
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
42547
42623
+
Met
CAT
[ENA]
¡û
>W1610642631
LJCX01000010
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
123307
123383
+
Met
CAT
[ENA]
¡û
>W1610642669
LJCX01000028
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
839676
839750
+
Met
CAT
[ENA]
¡û
>W1610642682
LJCX01000029
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
579800
579874
+
Met
CAT
[ENA]
¡û
>W1610642683
LJCX01000029
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
582277
582351
+
Met
CAT
[ENA]
¡û
>W1610648026
LJFU01000015
Actinomycetota
Mycobacteroides immunogenum [LJFU]
9779
9703
-
Met
CAT
[ENA]
¡û
>W1610666966
LJYI01000023
Actinomycetota
Mycobacteroides sp. H002 H002 [LJYI]
178522
178598
+
Met
CAT
[ENA]
¡û
>W1610746029
LMWJ01000004
Actinomycetota
Streptomyces curacoi [LMWJ]
25458
25384
-
Met
CAT
[ENA]
¡û
>W1610746053
LMWJ01000023
Actinomycetota
Streptomyces curacoi [LMWJ]
91100
91174
+
Met
CAT
[ENA]
¡û
>W1610746054
LMWJ01000023
Actinomycetota
Streptomyces curacoi [LMWJ]
93665
93739
+
Met
CAT
[ENA]
¡û
>W1610750207
LNBE01000001
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
411385
411459
+
Met
CAT
[ENA]
¡û
>W1610750208
LNBE01000001
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
105263
105189
-
Met
CAT
[ENA]
¡û
>W1610750226
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1648697
1648773
+
Met
CAT
[ENA]
¡û
>W1610750229
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
2651325
2651399
+
Met
CAT
[ENA]
¡û
>W1610750230
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
2653575
2653649
+
Met
CAT
[ENA]
¡û
>W1610849496
LPZL01000019
Actinomycetota
Rhodococcus corynebacterioides [LPZL]
27942
27866
-
Met
CAT
[ENA]
¡û
>W1610851466
LQBS01000002
Actinomycetota
Streptomyces griseochromogenes ATCC 14511 [LQBS]
3716779
3716853
+
Met
CAT
[ENA]
¡û
>W1610851467
LQBS01000002
Actinomycetota
Streptomyces griseochromogenes ATCC 14511 [LQBS]
3719004
3719078
+
Met
CAT
[ENA]
¡û
>W1610851476
LQBS01000002
Actinomycetota
Streptomyces griseochromogenes ATCC 14511 [LQBS]
1981212
1981138
-
Met
CAT
[ENA]
¡û
>W1610851509
LQBS01000044
Actinomycetota
Streptomyces griseochromogenes ATCC 14511 [LQBS]
222484
222408
-
Met
CAT
[ENA]
¡û
>W1610852541
LQCI01000004
Actinomycetota
Amycolatopsis regifaucium [LQCI]
11850
11924
+
Met
CAT
[ENA]
¡û
>W1610852542
LQCI01000004
Actinomycetota
Amycolatopsis regifaucium [LQCI]
14369
14443
+
Met
CAT
[ENA]
¡û
>W1610868007
LQYE01000001
Actinomycetota
Mycobacteroides immunogenum [LQYE]
1318544
1318620
+
Met
CAT
[ENA]
¡û
>W1610890681
LRQW01000024
Actinomycetota
Streptomyces scabiei [LRQW]
2661
2585
-
Met
CAT
[ENA]
¡û
>W1610890695
LRQW01000470
Actinomycetota
Streptomyces scabiei [LRQW]
2844
2770
-
Met
CAT
[ENA]
¡û
>W1610890696
LRQW01000471
Actinomycetota
Streptomyces scabiei [LRQW]
678
604
-
Met
CAT
[ENA]
¡û
>W1610890720
LRQW01000698
Actinomycetota
Streptomyces scabiei [LRQW]
39797
39723
-
Met
CAT
[ENA]
¡û
>W1610890980
LRRB01000092
Actinomycetota
Aldersonia kunmingensis [LRRB]
17828
17752
-
Met
CAT
[ENA]
¡û
>W1610896780
LRVD01000014
Actinomycetota
Cutibacterium avidum [LRVD]
110204
110128
-
Met
CAT
[ENA]
¡û
>W1610905860
LSBM01000054
Actinomycetota
Rhodococcus sp. SC4 [LSBM]
10137
10213
+
Met
CAT
[ENA]
¡û
>W1610913986
LSJT01000062
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
48990
49066
+
Met
CAT
[ENA]
¡û
>W1610958278
LVJL01000050
Actinomycetota
Cutibacterium avidum HL307PV1 [LVJL]
110713
110637
-
Met
CAT
[ENA]
¡û
>W1611028898
LZCI01000008
Actinomycetota
Cutibacterium acnes [LZCI]
134682
134606
-
Met
CAT
[ENA]
¡û
>W1611041250
LZMP01000035
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
221868
221944
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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